Template-based Modeling Results for YDEM_ECOLI


  Submitted Primary Sequence

>Length 385
MHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIKQYIAASGNQVYFTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEWCAFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVINNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRIPAKCQQCAYKPICNGGCPKHRITKVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIKQYIAASGNQVYFTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEWCAFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVINNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRIPAKCQQCAYKPICNGGCPKHRITKVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN
CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIKQYIAASGNQVYFTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEWCAFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVINNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRIPAKCQQCAYKPICNGGCPKHRITKVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN
1110012012301020210022333232233420231102200320131212100000111111111130022002102311233200000001001023300200341211000001113300121231321211012001002202223120000000012113202100200321202100000002112232312212310120120111121002001100121033212311121011001201122221010031021000010201001011111231311102323131011110111333232303202002102110010001313332122103002100200020021012103341212201200332345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIKQYIAASGNQVYFTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEWCAFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVINNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRIPAKCQQCAYKPICNGGCPKHRITKVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN
1MUSTER1tv8A0.1930.7661.153threading_1IRDLRLSVTDRCNFRCDYCMPKEVFVFLPKNELLTFDEMARIAKVYAELGVK--KIRITGGEPLMR-----RDLDVLIAKLNQIDGIDIGLTTNGLLL-KKHGQKLYDAGLRINVSLDAIDTLFQSIN---NRNIKATTILEQIDYATSIGLNVKVNVVIQKINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGWDFSK----------VVTKDEMLTMIEQHFEI-VEPKYFGEVAKYY-----RHKDNGVQSQSFCSTCT-RARLSSDGKFYGCLFATVDGFNVSGVTDEELKEQFKALWQIRDDR---------YSD------ERTAQTVANRQ----------------------------------------------
2SPARKS1tv7a0.1580.8052.543threading_2IRDLRLSVTDRCNFRCDYCMPKEDFVFLPKNELLTFDEMARIAKVYAELGVKK--IRITGGEPLMRRD--LDVLIAKLNQIDGIED--IGLTTNGLLL-KKHGQKLYDAGLRINVSLDAID--DTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKINDDQIIPMLEYFKDKHI-EIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFE--------IDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAIRSGVTDEELKEQFKALWQIRDDR--------------YSDERTAQTVANRQ-------------------------------------------
3PROSPECT21tv7A0.1540.7922.530threading_3IRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLLLTFDEMARIAKVYAELGVKK--IRITGGEPLMRRD--LDVLIAKLNQ--IDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDD--TLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKV-----------VTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYR----HKDNGVQFGLITSVSQTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDE---------------------------------------------------------ELKEQFKALWQIRDDRYSDERTAQTVANQ
4PPA-I1tv8A0.1710.7901.285threading_4IRDLRLSVTDRCNFRCDYCMFGDDFVFLPKNELLTFDEMARIAKVYAELGVK--KIRITGGEPLMR-----RDLDVLIAKLNQIDGIDIGLTTNGLLL-KKHGQKLYDAGLRINVSLDAIDTLFQSINNRNIK---ATTILEQIDYATSIGLNVKVNVVIQKINDDQIIPMLEYFKDKHI-EIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHF-------EIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCT-RARLSSDGKFYGCLFATVDGFNVSGVTDEELKEQFKALWQIRDDR---------YSDERTAQTVANRQ----------------------------------------------------
5HHPRED-l1tv8_A0.1580.7565.304threading_5RDLRLS-VTDRCNFRCDYCMPKEVFGFLPKNELLTFDEMARIAKVYAELGVKK--IRITGGEPLMRRD--L---DVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDGLRRINVSLDAIDDLFQSIN---NRNIKATTILEQIDYATSIGLNVKVNVVIQKINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGWDFSKVVT----------KDEMLTMIEQHFEIDPVEPKYGEVAKYYRKDNGVQFGITSVSQSFCSTC-TRARLSSDGKFYGCLFATVDGFNVKAFISGELKEQFKALWQIRDDRYNRQ-----------------------------------------------------------------------
6HHPRED-g1tv8_A0.1690.7694.637threading_6IRDLRLSVTDRCNFRCDYCMPKEVFVFLPKNELLTFDEMARIAKVYAELGVKKIR--ITGGEPLMRRD-----LDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRINVSLDAIDTLFQSIN---NRNIKATTILEQIDYATSIGLNVKVNVVIQKINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNG----------WDFSKVVTKDEMLTMIEQHFEIDPEKYFGEVAKYYRHKDNGVQFGITSVSQSFCSTCT-RARLSSDGKFYGCLFATVDGFNVKAFIDEELKEQFK-------ALWQ--IRDDRYQTVANRQ----------------------------------------------------------
7SP31tv7a0.1650.8032.653threading_7IRDLRLSVTDRCNFRCDYCMPKEDFVFLPKNELLTFDEMARIAKVYAELGVK--KIRITGGEPLMR-----RDLDVLIAKLNQIDGIDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDADDTLFQSIN---NRNIKATTILEQIDYATSIGLNVKVNVVIQKINDDQIIPMLEYFKDKHI-EIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIE--QHF-----EIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCT-RARLSSDGKFYGCLFATVDGFNVAFIRSGVTDEELKEQFKALW-----QIRD-DRYSD-----ERTAQTVANRQ----------------------------------------------
8SAM-T991tv8A0.1780.7452.776threading_8IRDLRLSVTDRCNFRCDYCMPKEDFVFLPKNELLTFDEMARIAKVYAELGVKKIRIT--GGEPLMR-RDL-DVLIAKLNQI--DGIEDIGLTTNGLLLKK-HGQKLYDAGLRINVSLDAIDDTLFQSINNRNIKA--TTILEQIDYATSIGLNVKVNVVIQKGINDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGW------------DFSKVV--TKDEMLTMIEQHFE--IDPVEPKYFGEVAKYYRHKDNGVQSFCSTC-TRARLSSDGKFYGCLFATVGFNVKAFIRSGVTDEELKEQFKALWQIRDDR-----------------------------------------------------------------------
9MUSTER2yx0A0.1400.6290.677threading_9RCLQMTPVLAWCTHNCIFCWRPMENFLGTPQPWDDVEESIKAQRKLLIGYKPKVHAAISLGEPMLYPY--MGDLVEEFHKR----GFTTFIVTNGTIP-ERLEEMIKEDKLQLYVSITAPIETYNSVNIPM-IPDGWERILRFLELMRDLPTRTVVRLTLVKENMHSPEKYAKLILKARPMFVEAKAYMNRLTINN---------------MPSHQDIREFAEALVKH-----LPGYHI----------------EDEYEPSR--VVLIMRD-DVDPQGTGVE-----GRFIKH-------------------------------------------------------------------------------------------
10SPARKS1olta0.1020.9451.544threading_10VHI------PFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQNADAEISIEVDPREIELDVLDHLRAEGFN-RLSM-GVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTTNIDLIYGKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADL------PSPQQKLDILQETIAFLTQSGYQFIGMDHFDDELAVAQREGVLHRNFQGYTTQ-----GDTDLLGMG--VSAISMIGDCYAQNQKELKQYYQQVDEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYSPIEQQWLLFADYFAEDLKLLAPLAKDGQVTAKGRLLIRNICMC

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.784 to 1tv8A
SCOP code=c.1.28.3
TM-score=0.857 to 1tv8A
SCOP code=c.1.28.3
TM-score=0.867 to 1tv8A
SCOP code=c.1.28.3
TM-score=0.827 to 1tv8A
SCOP code=c.1.28.3
TM-score=0.847 to 1tv8A
SCOP code=c.1.28.3