Template-based Modeling Results for YDDW_ECOLI

Submitted Primary Sequence

>Length 439
MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSKPPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWFNPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFDDYFYTESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIAKVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQLDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSKPPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWFNPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFDDYFYTESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIAKVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQLDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHCCCCHHCCCCCCEEEECCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSKPPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWFNPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFDDYFYTESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIAKVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQLDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS
5320231121002100000000000000311323222223222332222332232010000000021221322212122221322111310121011035021100000011201111304112223102022122211010210022024220100000000101132331213322210131121221222310100131000011123002000100020033120100000101113220231221200231122222222001210220012002002312220100101111122322122122130010012000001200431000000000002123220303100210120032231200000010201322322331223211320230021123134120000011210222302300210233125
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSKPPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWFNPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFDDYFYTESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIAKVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQLDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS
1	MUSTER	2yfnA	0.146	0.875	1.162	threading_1	LFVYSGNFSCEAEKTRLLLGLNEELFSYPLASGETFTVPEVISYSAEGLSALSQQYHNCIRNHVCRSKYVHMQRPVLSWEAAYFDFTGDTIVDLAKEAASLGIDMVVMD-----DGWFGKRNDDNSSLGDWQVNETKLGGSLAELITRVHEQGMKFGIWIEPEMINEDSD---------LYRAHPDWAIRIQGKKPVRSRNQLLLDFSRKEVRDCVFDQICVVLDQGKIDYVKWDMNRSMADVYAG-------------------NLSYDYVLGVYDFMERLCSRYPDLLLEGCSGGGGRFDAGMYYSPQIWCSDNTDAINRTRIQYGTSFFYSAMGAHVSVPNHQTGRVTSFHTRGVTAMA---------GTFGYEL------NPALLSDEEKQQIREQIKTYKKYETLEGTYWR----LSDPFTDEIAAWM---SVS
2	SPARKS	1ji2a3	0.125	0.781	1.730	threading_2	----------------------------------VFTTPEWAKEAVIYQIFPERFANGD--PSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYF------TPIFASP-SHHKYDTADYLAIDPQFPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWME-QGIDGWRLDVANEVD------------------------------HAFWREFRRLVKSLNPDALIV---GEIWHDASGWLMGDQFDSVMN-YLFRESVIRFFATGEI-------------HAERFDAELTRARMLYPEQAAQ----GLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTYGDEIGMAGA-TDPDCRRPMIWEEKEQNR
3	PROSPECT2	1uuqA	0.109	0.793	1.687	threading_3	EHFVRVN---------------------------------------------GGHFKPYVITGVNMWYAAYLGAPNEVG-------DRDRLAKELDNLKAIGVNNLR--VLAVSEKSEINSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYF----NNFWQWSGGMTQYMAWIEGEPVQDPNVTNEWEAFMAKSASF-YRSEKAQQEYRKTLEKIITRVDATIMSWQLANEPRPGNSQTT----------------AEEKQIYIDWVHAAAAYIKTLDAHHLVSSGSEGEMGSVND----------------MQVFIDAHATPDIDYLTYHMWIRNWSWFDKAQNYMRAHIDVAKQLNKPLVLGLDRDMGSYAMDSTTEYRDNYFRGVFELMLASLEQGEPSAGYNIWAWNGYTDTSTIAIMKEFNARFQP
4	PPA-I	2xn0A2	0.130	0.702	1.046	threading_4	-----------------------------------------------------------------RSKFKDQIRPVLVNNWEATYFNEDKLKTIVDKAKKLGLEMFVLD-----DGWFGHRDDDNSSLGDWKVYKKKFPNGLGHFADYVHEQGLKFGLWFEPEMISYESN---------LYKEHPDYLMHVPGRKPCPSRNQYVLELGRKEVRDNIFEQMVKILDSKKIDYIKWDMNRSLSDIYESDLP-------ADQQGE----AYHRYVLGYYDLLNKLVTRYPDILFEGCSGGGGRFDVGQAYYTPASDNTDAIERLKIQYGTSLVYPQSMMTSHVSVSPNEQNGR---ITPFNTRGAVAMWGDLGYE-----------LDLTKMSDEESDQVVKQVTEYKKIREVFG---------------------------
5	HHPRED-l	3mi6_A	0.174	0.747	2.392	threading_5	ILSYTSAG-NQLS-----QQ-ASFYQQHLV--------NP-------RFAHEERPV--LINN------WEATY------FDFN----EAKL-TIVNQAKRLGIE-FVLDDGWFGHRDDTTSLGDWF----VDQRKFP--DGIEHFSQAVHQQG-KFGLWFEPE-VSVD------SDLYQQHPDWLIHAPKSTP---TPGRHQFVLD-ARPEVVDYLFKL----IESANLDYIKWD-NRYATE-FSSLSDLELPHRY---------------ILGVYQLYARLTQAYPNVLFESCASGGGRFDLG--YYA-PQAWTSDDT---DAAERIQFGTSYG-YPQA-HSPNDRITSLKTRG---A-VAF-F-GDLGYEL-----------DITK-APTELDQVKKQVAFYKCYRQFFG-KFYRIDSPFDGNV-TSWQVVS-DDQ-
6	HHPRED-g	3mi6_A	0.189	0.733	2.966	threading_6	LSYTSAG-NQLSQQ-ASFYQQH-------LVN--------------PRFAHEERPLINNWEATYFDF-------------------NEAKL-TIVNQAKRLGIE-FVLDDGWFGHRDDTTSLGDWFV----DQRKFP--DGIEHFSQAVHQQG-KFGLWFEPE-VSVDS-----------------DLYQQHPDWLIHAPHQFVLD-ARPEVVDYLFKL----IESANLDYIKWD-NRYATE-FSSRLTSD---------QQLELPHRY--ILGVYQLYARLTQAYPNVLFESCASGGGRFDLPQAWTSD--------DTDAAERLLIQFGTSYGYPQA--GHVSDQITSLK--TRGA--VA--FFGDLGYELDITK-A-----------PTELDQVKKQVAFYKCYRQFFGK-FYRIDSPFDGNV-TSWQVVSKDFYT
7	SP3	3ucqa	0.126	0.943	1.720	threading_7	AFDDDRDAETFLLRLERYGEDLWESLRAVYGDQVRALPGRLLEVMLHAYHARPAELRRLDEARLLRPDWLRPEMVGYVAYTDRFAGTLKGVEERLDYLEGLGVKYLHL------MPLLREGENDGGYAVQDYRAVRPDLDDLSALARALRGRGIREHAWAQKARAGDPEATLPEIFPDFAPGNFSWDEEIGEGEWTTFNSYQWDLNWANPDVFLEFVDIILYLANR-GVEVFRLDAIAF------------IWKRLGTDCQNQP-----EVHHLTRALRAAARIVAPAV-AFKAEAIVAPADLIHYLGTRAHHGKLWSSLARLFEEALRATWGDDIGWISDEDAARAGLNGAAHRHFLSDFYSGQFPGSFAGLVFQYNPVNGDRRISGSATGDPGRIEDAVRRLLLLHGFGGVPLLYYAFEDVPEHAPDNRWVHRPWAL
8	SAM-T99	2xn0A	0.127	0.806	4.597	threading_8	VNTGINDYNFKWKLNPNEEFQTPEVLMVYSDQGLNKMSQAFHSLIHERRSKFKDQIRPVLVNN---------------WEATYFDFNEDKLKTIVDKAKKLGLEMFVLDDGWFGH---RDDDNSSLGDWKVYKKKFPN--GLGHFADYVHEQGLKFGLWFEPEMISYESN-----------------LYKEHPDYLMHSRNQYVLELGRKEVRDNIFEQMVKILDSKKIDYIKWDMNRSLSDIYESDLPADQQ--------------GEAYHRYVLGYYNKLVTRYPDILFEGCSGGGGR--------------FDVGQAYYTPQIWASDDAIERLKIQYGTSLVYPQSMMTSHVSVSPNEQNGRITPFNTRGAVAMWGDLGYELDLTKMSEESDQVVKQVTEYKKIREVTQFGLYRLK--------------------
9	MUSTER	2xn0A	0.129	0.897	1.086	threading_9	FEV----ERDQFGQIHVNTGINDYNFKWKLNPNEEFQTPEVLVYSDQGLNKMSQAFHSLIHERIMRSKFKDQIRPVNNWEATYFDFNEDKLKTIVDKAKKLGLEMFVLD-----DGWFGHRDDDNSSLGDWKVYKKKFPNGLGHFADYVHEQGLKFGLWFEPEMISYESN---------LYKEHPDYLMHVPGRKPCPSRNQYVLELGRKEVRDNIFEQMVKILDSKKIDYIKWDMNRSLSDIYESDLP-----------ADQQGEAYHRYVLGYYDLLNKLVTRYPDILFEGCSGGGGRFDVGAYYTPQIWASDNTDAIERLKIQYGTSLVYSMMTSHVSVSPNEQNGR-ITPFNTRGAVA----GDLGYELDLTKMS-----------DEESDQVVKQVTEYKKIREVFGTLYRLKASMVDSNKNEAVVTVVNVMAH
10	SPARKS	3ucqa	0.121	0.943	1.582	threading_10	AFDDDRDAETFLLRLERYGEDLWESLRAVYGDQVRALPGRLLEVMLHAYHARPAELRRLDEARLLRPDWQRPEMVGYVAYTDRFAGTLKGVEERLDYLEGLGVKYLHL------MPLLREGENDGGYAVQDYRAVRPDLDDLSALARALRGRGIREHAWAQKARAGDPEATLPEIFPDFAPGNFSWDEEIGEGEWTTFNSYQWDLNWANPDVFLEFVDIILYLANR-GVEVFRLDAIAF------------IWKRLGTDCQNQP-----EVHHLTRALRAAARIVAPAV-AFKAEAIVAPADLIHYLGTRAHHGKVSNSLMVQLWSSLASRNTRLFTWGLYVRAARAGLNGAAHRHFLSDFYSGQFPGSFAGLVFQYNPVNGDRRISGSETGDPGRIEDAVRRLLLLHTVGGVPLLYYAFEDVPEHAPDNRWVHRPQMD

Predicted Tertiary Structure


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TM-score=0.675 to 1we5A SCOP code=b.150.1.1	TM-score=0.682 to 1we5A SCOP code=b.150.1.1	TM-score=0.796 to 1ea9C SCOP code=b.1.18.2	TM-score=0.805 to 1uz4A SCOP code=c.1.8.3	TM-score=0.678 to 1we5A SCOP code=b.150.1.1