Template-based Modeling Results for YDDH_ECOLI

Submitted Primary Sequence

>Length 189
MSRFIPIELHHASRLLNHGPTVLITSFDEQSQRRNIMAAAWSMPVEFEPPRVAIVVDKSTWTRELIEHNGKFGIVIPGVAATNWTWAVGSVSGRDEDKFNCYGIPVVRGPVFGLPLVEEKCLAWMECRLLPATSAQEEYDTLFGEVVSAAADARVFVEGRWQFDDDKLNTLHHLGAGTFVTSGKRVTAG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSRFIPIELHHASRLLNHGPTVLITSFDEQSQRRNIMAAAWSMPVEFEPPRVAIVVDKSTWTRELIEHNGKFGIVIPGVAATNWTWAVGSVSGRDEDKFNCYGIPVVRGPVFGLPLVEEKCLAWMECRLLPATSAQEEYDTLFGEVVSAAADARVFVEGRWQFDDDKLNTLHHLGAGTFVTSGKRVTAG
CCCCCCCCHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEEEEEEEECCCCEEEEEECCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHCCCEEEECCCCCCCEECCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEECHHHCCCCCCCCCHHHCCEEEECCCCEEEEECCEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSRFIPIELHHASRLLNHGPTVLITSFDEQSQRRNIMAAAWSMPVEFEPPRVAIVVDKSTWTRELIEHNGKFGIVIPGVAATNWTWAVGSVSGRDEDKFNCYGIPVVRGPVFGLPLVEEKCLAWMECRLLPATSAQEEYDTLFGEVVSAAADARVFVEGRWQFDDDKLNTLHHLGAGTFVTSGKRVTAG
554222132310120012000000001144332200000000000112101000001322201310230120000000220020021002211333211221202002032120000232010101010020112432000000100000013300132323013320100000120100111220235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSRFIPIELHHASRLLNHGPTVLITSFDEQSQRRNIMAAAWSMPVEFEPPRVAIVVDKSTWTRELIEHNGKFGIVIPGVAATNWTWAVGSVSGRDEDKFNCYGIPVVRGPVFGLPLVEEKCLAWMECRLLPATSAQEEYDTLFGEVVSAAADARVFVEGRWQFDDDKLNTLHHLGAGTFVTSGKRVTAG
1	MUSTER	1ejeA	0.245	0.974	3.319	threading_1	MMSMDFFPVESAHRILTPRPTVMVTTVDEEG-NINAAPFSFTMPVSIDPPVVAFASAPDHHTARNIESTHEFVINITPADIIERMWVTARDIPAGENELEAAGLAWTSSRRVKPPRIVEAP-GHLECELLRMFEVGD-HNLITGSVVSASVRSGAVKEGL--LDVESVKPVLHVGGNKFVVGDHVRHVE
2	SPARKS	1ejea	0.257	0.968	4.508	threading_2	SMDFEDFPVESAHRILTPRPTVMVTTVDEEG-NINAAPFSFTMPVSIDPPVVAFASAPDHHTARNIESTHEFVINITPADIIERMWVTARDIPAGENELEAAGLAWTSSRRVKPPRIVEAP-GHLECELLRMFEVG-DHNLITGSVVSASVRSGAVKEGL--LDVESVKPVLHVGGNKFVV-GDHVRHV
3	PROSPECT2	1ejea	0.245	0.974	2.937	threading_3	GSDFEDFPVESAHRILTPRPTVMVTTVDEEGN-INAAPFSFTMPVSIDPPVVAFASAPDHHTARNIESTHEFVINITPADIIERMWVTARDIPAGENELEAAGLAWTSSRRVKPPRI-VEAPGHLECELLRMFEVGD-HNLITGSVVSASVRSGAVKEG--LLDVESVKPVLHVGGNKFVVGDHVRHVE
4	PPA-I	1ejeA	0.245	0.974	4.467	threading_4	SMDFEDFPVESAHRILTPRPTVMVTTVDEEG-NINAAPFSFTMPVSIDPPVVAFASAPDHHTARNIESTHEFVINITPADIIERMWVTARDIPAGENELEAAGLAWTSSRRVKPPRIVE-APGHLECELLRMFEVG-DHNLITGSVVSASVRSGAVKEGL--LDVESVKPVLHVGGNKFVVGDHVRHVE
5	HHPRED-l	1eje_A	0.247	0.963	3.821	threading_5	SMDFEDFPVESAHRILTPRPTVMVTTVDEE-GNINAAPFSFTMPVSIDPPVVAFASAPDHHTARNIESTHEFVINITPADIIERMWVTARDIPAGENELEAAGLAWTSSRRVKPPR-IVEAPGHLECELLRMFEV-GDHNLITGSVVSASVRSGAVKEG--LLDVESVKPVLHVG-GNKFVVGDHVRH-
6	HHPRED-g	3bpk_A	0.191	0.942	3.665	threading_6	-LSINPNEEKDNYKLLIPRPVAFVTSVTKEG-VLNGAPYSYFNIVAANPPLISVSVGERKDTSRNAIEKGEFVVHISDESYVAAINETAAN----ESEIELAKLTPIESEVISVPGVKEANI-R-ECVLERAIPLGGTCDLLIGRVVRFHVAEHLYEKG--RIHAEGLKPISRLAGHNYAKLGEQFEL-
7	SP3	2d5ma	0.282	0.937	4.381	threading_7	MKKSL-----GARTLAYPTPLFLVGTYDRDS-RPNIMAAAWAGICCSQPPSIAVSLRKATYTYRSITERGAFTISIPSRAYVRHADYAGIYSGENEDKFASLGLTPVPGEHVDAPYVGEFP-MAIELKLIHQI----EHTQFIGEIMDVKVDESCLRDD-GLPDINKVDPVIFAPVSEYYAVGEFLAKA
8	SAM-T99	2d5mA	0.267	0.931	3.790	threading_8	------KKSLGARTLAYPTPLFLVGTYDR-DSRPNIMAAAWAGICCSQPPSIAVSLRKATYTYRSITERGAFTISIPSRAYVRHADYAGIYSGENEDKFASLGLTPVPGEHVDAPYVGE-FPMAIELKLIHQIE----HTQFIGEIMDVKVDESCL-RDDGLPDINKVDPVIFPVSREYYAVGEFLAKA
9	MUSTER	2d5mA	0.277	0.937	3.288	threading_9	MKKSL-----GARTLAYPTPLFLVGTYDRDS-RPNIMAAAWAGICCSQPPSIAVSLRKATYTYRSITERGAFTISIPSRAYVRHADYAGIYSGENEDKFASLGLTPVPGEHVDAPYVGEFP-MAIELKLIHQIE----HTQFIGEIMDVKVDESCLRDD-GLPDINKVDPVIFAPVSEYYAVGEFLAKA
10	SPARKS	3fgea	0.175	0.968	4.344	threading_10	FSHINALETRTRAHFSGFKSANLIGTQDRQG-NTNLSIVSSVIHLGANPPLGII--RPPRHTFEN-IQTGLYTINHVNQSIYEQAHQTSARYDKDESEFEATGLTPEYLSDFCAPFVKESR-LKYSVKLVEHQHLANGTEFVIGEIVDVYVDDNAVQTD-GFIDLQAIDTVAISGLDCYYTGDKLARLP

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.919 to 1ejeA SCOP code=b.45.1.2	TM-score=0.919 to 1ejeA SCOP code=b.45.1.2	TM-score=0.909 to 1ejeA SCOP code=b.45.1.2	TM-score=0.919 to 1ejeA SCOP code=b.45.1.2	TM-score=0.919 to 1ejeA SCOP code=b.45.1.2