Template-based Modeling Results for YDDG_ECOLI

Submitted Primary Sequence

>Length 293
MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLSGLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEICLALSLGYAATHHQAIEVGMVNYLWPSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGDNGLHYDEIINNITTSPLSYFLAFIGAFIWAAYCTVTNKYARGFNGITVFVLLTGASLWVYYFLTPQPEMIFSTPVMIKLISAAFTLGFAYAAWNVGILHGNVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGALMVCGGSLLCWLATRRG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLSGLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEICLALSLGYAATHHQAIEVGMVNYLWPSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGDNGLHYDEIINNITTSPLSYFLAFIGAFIWAAYCTVTNKYARGFNGITVFVLLTGASLWVYYFLTPQPEMIFSTPVMIKLISAAFTLGFAYAAWNVGILHGNVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGALMVCGGSLLCWLATRRG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLSGLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEICLALSLGYAATHHQAIEVGMVNYLWPSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGDNGLHYDEIINNITTSPLSYFLAFIGAFIWAAYCTVTNKYARGFNGITVFVLLTGASLWVYYFLTPQPEMIFSTPVMIKLISAAFTLGFAYAAWNVGILHGNVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGALMVCGGSLLCWLATRRG
55421010100000000000000010003200100000000000000000011123033112000000000000000000000110223231000000000000000000111323301100000000000000000003210202200110131020000000000000000000211231230000000000000000000122231111120001000000000000000100022010100000010010000000000110211110010000000000001112344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLSGLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEICLALSLGYAATHHQAIEVGMVNYLWPSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGDNGLHYDEIINNITTSPLSYFLAFIGAFIWAAYCTVTNKYARGFNGITVFVLLTGASLWVYYFLTPQPEMIFSTPVMIKLISAAFTLGFAYAAWNVGILHGNVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGALMVCGGSLLCWLATRRG
1	MUSTER	3zuxA	0.115	0.976	1.126	threading_1	LSKSFIGKTFSLWAALFAAAAFFAPDTFKWAGPY--IPWLLGIIMFGMGLTLKPSDFDILHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCPTASNVMTYLA-RGNVALSVAVTSVSTLTSPLIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVL-KTEKLTDALPLVSVAAIVLIIGAVVGASK---GKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAPVVPGALFSVWHNISGSLLATYWAAKA
2	SPARKS	2xwub	0.123	0.969	1.090	threading_2	LPPYAANIVAVSQDVLTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPN--PSNKLAIVHILGLLSNLFTTLDISHPNPVVVVLQQVFQLIQKVLSKWLNDAQ-----VVEAVCAIFEKSVKTLLDDPQLCEMLGRMYSTIPFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCE--RLDVKAVFQCAVLAPTVKASCGFFTELLPRCGSVGKVVQEDGRMLLIAVLEAIGGQASRSADILFALNKHCFSLLSMWIKEALQ
3	PROSPECT2	3a0oA3	0.074	0.928	1.448	threading_3	GRSARHAHCGWAEFYEWRQMYIDCQEVIYAIRHLAIAGRVASRKWLLAVAAWDTKGATSRAYNDEAGFRVVVALAWGYDWLYDHLSEDERRTVRSVLLERTREVADHVIAHARIHVFPYDSHAVRSLSAVLTPACIALQGESDEAGEWLDYTVEFLATLPHYWMTGMAYLIEAANLIRSYIGYDLYQRPFFQNTGRFPLYTKADSTLGDLPGLKLGYNVRQFAGVTGNGHYQW---------------------YFDHIKADATGTEMAFYNYGWWDLNFDDLVYRHDYPQVE
4	PPA-I	3zuxA	0.092	0.997	1.694	threading_4	KISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPTASNVMTYLARGNVSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMS-IVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAVVAVPGALFSVWHNISGSLLATYWAAKA
5	HHPRED-l	3b5d_A	0.131	0.338	3.237	threading_5	----------------------------------------------------------------------------------------------------------------------------------------------------------------YLGGAILAEVIGTTLMKFSEG------------------------FT-----RL--WPSVGTIICYCASFWLLAQTLAYIPTGIAYAISGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS---
6	HHPRED-g	3b5d_A	0.162	0.338	2.734	threading_6	----------------------------------------------------------------------------------------------------------------------------------------------------------------YLGGAILA-EVIGTTLMKFSEGF----------------------------TR--LWPSVGTIICYCASFWLLAQTLAYIPTGIAYAISGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS---
7	SP3	3zuxa	0.119	0.976	0.538	threading_7	ILSKISSFIGFSLWAALFAAAAFFA--PDTFKWA-GPYIPWLLGIIMFGMGLTLKILFKHP-KVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCPTASNVMTYLARGN-VALSVAVTSVSTLTSPLAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVL--GSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMSGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAPGALFSVWHNISGSLLATYWAAKA
8	SAM-T99	3b61A	0.198	0.345	0.782	threading_8	-----------------------------------------------------------------------------------------------------------------------IYLGGAILAEVIGTTLMKFSEGFTRLWPS--------VGTIICYCASF-----------------------------------------------WLLAQTLAYIPTGIAYAIWSGV-----------------VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSRS-
9	MUSTER	1t5jA	0.115	0.949	0.939	threading_9	LVKMRDKILGSVFGAVIGDALGMP---TENLTKEEIKKLYGFVDSYVEPKNYLAGKLNKGEWT-------DDTEQAICLIKSLTKEGIDIKKFANCLIAWKNLTSLMAIDKLENNDYSGVSSSCGAAMRIYPLGIVF-HNNLKKLKEEVIKASKITHNNKTAIAGALAIAFFVSSALKDRKDFSLLECYNYIKDIDEEFAKKLLEIKNFNNLDYIYDYFGTGVKTDEVVPSAIATYLLTDNGMLKCINTDSLASMYGAMAGAYYGFK--IDGLKKEVIFELAERLYHLATE--
10	SPARKS	2x1gf	0.099	0.932	1.054	threading_10	MQLGK---SQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLN--RLCISLGAYIVHMLGEEVINTFQ----NQRSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLV----------IHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWPCIHGCMTADENELAESCLKTMVNIIIQPDCHNY-PKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLS

Predicted Tertiary Structure


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TM-score=0.433 to 1pw4A SCOP code=f.38.1.1	TM-score=0.445 to 2q7nB SCOP code=a.26.1.1	TM-score=0.630 to 3ea5B SCOP code=a.118.1.1	TM-score=0.567 to 1fp3A SCOP code=a.102.1.3	TM-score=0.425 to 2nxpA SCOP code=d.379.1.1