Template-based Modeling Results for YDDE_ECOLI

Submitted Primary Sequence

>Length 297
MKPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSDVRIRYFTPTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYRISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAIEL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSDVRIRYFTPTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYRISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAIEL
CCCEEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCCCCEEEEECCCEEEEEEECCHHHHHHCCCCHHHHHHHHHHCCCEEEEEEEEECCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEEEEEECCCCCCEEEEEEEEEEEEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSDVRIRYFTPTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYRISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAIEL
550200000000222141110000002320232101100320222100000212321010000012222210110000000010322222222010102212020102233321200022121213222313122101301302231012111010011110100000222210220112131022004402010000011111412000200012111122100010000000000112112332220201021021223301010101233443220000010000020202033
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSDVRIRYFTPTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYRISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAIEL
1	MUSTER	1qyaB	0.997	1.000	3.094	threading_1	LKPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSDVRIRYFTPTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYRISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAIEL
2	SPARKS	1p9va	0.942	0.983	5.984	threading_2	HKPQVYHVDAFTSQPFRGNSAGVVFPADNLSEA-QQLIARELGHSETAFLLHSDDSDVRIRYFTPTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYRISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGH-SKVIPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQI-RPGKNETDGRFSPAIGIVEDPVTGNANGPG-AWLVHHNVLPHDGNVLRVKGHQGRALGRD-GIEVTVTIRDNQPEKVTISGTAVILFHAEWAIEL
3	PROSPECT2	3ednA	0.288	0.960	4.743	threading_3	KTINVFHYDAFTNK-PNGNPAGIVLDADGLTEE-EQRIAEKVGFNETSFVLSSEVAD-IRRYFTPGYE-DLCGHGTVGTIYALRERGLLEKASLTIETKAGILPIQIGVNENGETFIKRQTAPQFKDF--AGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVIVPVKNLD-VCERKPNNEVFPSVLKEIPNASIHPICLETEKVHHGRHFSSAYAGTIEDPVTGTASGVGAYYATYVEKDFDHEE---LIVEQGQEIHKDGRVTVYVTKDESEKLQIDIAGTAVYVKEFEVL--I
4	PPA-I	1qyaB	0.997	1.000	3.232	threading_4	LKPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSDVRIRYFTPTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYRISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAIEL
5	HHPRED-l	1qya_A	0.997	0.983	5.631	threading_5	LKPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSDVRIRYFTPTVEVPI--HATVAAHYVRAKVLGLGNCTIWQTSL--KHRVTIEKHNDDYRISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAIE-
6	HHPRED-g	1qya_A	0.997	0.987	5.129	threading_6	LKPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSDVRIRYFTPTVEVPI--HATVAAHYVRAKVLGLGNCTIWQTSL--KHRVTIEKHNDDYRISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAIEL
7	SP3	1p9va	0.942	0.983	5.952	threading_7	HKPQVYHVDAFTSQPFRGNSAGVVFPADNLSEA-QQLIARELGHSETAFLLHSDDSDVRIRYFTPTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYRISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGH-SKVIPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQI-RPGKNETDGRFSPAIGIVEDPVTGNANGPG-AWLVHHNVLPHDGNVLRVKGHQGRALGRD-GIEVTVTIRDNQPEKVTISGTAVILFHAEWAIEL
8	SAM-T99	1qyaB	1.000	0.997	4.986	threading_8	-KPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSDVRIRYFTPTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYRISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAIEL
9	MUSTER	1u1wB	0.308	0.929	2.757	threading_9	M-HNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGDALIRIFTPVNELPFAGHPLLGTAIALGAHT--DNHRLYLETQMGTIAFELERQNGSIAASMDQPIPTWTAL---GRDAELLKALGIS----DSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNF----HDMAINCFAG--AGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQP---VEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL--
10	SPARKS	1ym5a	0.230	0.953	5.694	threading_10	LMVPFKQVDVFTEKPFMGNPVAVIIDENEVSQEELQAIANWTNLSETTFLFKPSDYDYKLRIFTPRSELPFAGHPTIGSCKAFLEFTKNTATSLVQECKIGAVPITINEG----LISFKAPMADY-ESISSEMIADYEKAIGLK-----FIKPPALLHTGPEWIVALVEDAETCFNANPNFAMLAHQTKQNDHVGIILAGPKKEKNSYEMRAFAPVINVYEDPVCGSGSVALARYLQEVYKFEKT---TDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKVH-

Predicted Tertiary Structure


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TM-score=0.984 to 1qyaB TM-score=1.000 to native SCOP code=d.21.1.2	TM-score=0.984 to 1qyaB TM-score=1.000 to native SCOP code=d.21.1.2	TM-score=0.950 to 1qyaB TM-score=0.966 to native SCOP code=d.21.1.2	TM-score=0.859 to 1qyaB TM-score=0.875 to native SCOP code=d.21.1.2	TM-score=0.984 to 1qyaB TM-score=1.000 to native SCOP code=d.21.1.2

Experimental Structure

Download 1qyaB

SCOP code=d.21.1.2