Template-based Modeling Results for YDCU_ECOLI

Submitted Primary Sequence

>Length 313
MAMNVLQSPSRPGLGKVSGFFWHNPGLGLFLLLLGPLMWFGIVYFGSLLTLLWQGFYTFDDFTMSVTPELTLANIRALFNPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYTSGKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGLEPLLTAFLTLPAVGGNTLSTSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIILIALYLAFVKRLGAFDAL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAMNVLQSPSRPGLGKVSGFFWHNPGLGLFLLLLGPLMWFGIVYFGSLLTLLWQGFYTFDDFTMSVTPELTLANIRALFNPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYTSGKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGLEPLLTAFLTLPAVGGNTLSTSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIILIALYLAFVKRLGAFDAL
CCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAMNVLQSPSRPGLGKVSGFFWHNPGLGLFLLLLGPLMWFGIVYFGSLLTLLWQGFYTFDDFTMSVTPELTLANIRALFNPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYTSGKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGLEPLLTAFLTLPAVGGNTLSTSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIILIALYLAFVKRLGAFDAL
5523222222321102000001222210100010001000000000100000110101023121101130002001100211001000100000000000000000000000021222302100000000000000000000000000320000100220012111111111122111100000001000000000000000010002401320120022020331100000001001200000000000100010000100022211001000110021021100000000000000000000221232334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAMNVLQSPSRPGLGKVSGFFWHNPGLGLFLLLLGPLMWFGIVYFGSLLTLLWQGFYTFDDFTMSVTPELTLANIRALFNPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYTSGKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGLEPLLTAFLTLPAVGGNTLSTSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIILIALYLAFVKRLGAFDAL
1	MUSTER	2onkC	0.183	0.802	2.150	threading_1	-------------MRLLFSALLA-----LLSSII-LLFVLLPVAATVTLQ------------------LFNFDEFLKAASPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARK-SFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFS-------------------PLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYYPMIAPTLIYERYLSE-GLSAAMPVAAILILLSLAVFVALRIIVG----
2	SPARKS	2onkc	0.175	0.802	5.797	threading_2	------------------------MRLLFSALLALLSSIILLFVLLPVAATVTL-------------QLFNFDEFLKAADPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARK-SFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGL-------------------IGSFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYYPMIAPTLIYERYLS-EGLSAAMPVAAILILLSLAVFVALRIIVG----
3	PROSPECT2	2onkC	0.183	0.802	2.908	threading_3	M-------------RLLFSALL--------ALLSSIILLFVLLPVAATVT----------------LQLFNFDEFLKAADPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSF-PGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFS-------------------PLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYYPMIAPTLIYERYLSE-GLSAAMPVAAILILLSLAVFVALRIIVG----
4	PPA-I	2onkC	0.175	0.802	5.564	threading_4	------------------------MRLLFSALLALLSSIILLFVLLPVAATVTLQL-------------FNFDEFLKAASPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARK-SFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSG-------------------LIGSFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYYPMIAPTLIYERYLSE-GLSAAMPVAAILILLSLAVFVALRIIVG----
5	HHPRED-l	2onk_C	0.179	0.802	6.325	threading_5	------------------------MRLLFSALLALLSSIILLFVLLPVAATVTLQ-------------LFNFDEFLKAADPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKS-FPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFS---PLK----------------FVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYYPMIAPTLIYERY-LSEGLSAAMPVAAILILLSLAVFVALRIIVG----
6	HHPRED-g	2onk_C	0.179	0.802	5.892	threading_6	------------------------MRLLFSALLALLSSIILLFVLLPVAATVTLQ-------------LFNFDEFLKAADPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKS-FPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFS---PLK----------------FVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYYPMIAPTLIYER-YLSEGLSAAMPVAAILILLSLAVFVALRIIVG----
7	SP3	2onkc	0.184	0.799	4.835	threading_7	------------------------MRLLFSALLALLSSIILLFVLLPVAATVTLQL-------------FNFDEFLKAADPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARK-SFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFS--------PLK-----------FVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYYPMIAPTLIYERYLSE-GLSAAMPVAAILILLSLAVFVALRIIG-----
8	SAM-T99	3d31C	0.158	0.789	3.521	threading_8	---------------------------------------PLTFVFSFLLLVLFLFIFLTLSNMIFEQITEDFSGLVKAANRSVISSIFLSLYAGFLATLLALLLGAPTGYILARFD-FPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRG----------LIGEPLE-------SYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRF---ISYGLSASRPIAVLLILVTLSIFLVIR------
9	MUSTER	3d31C	0.154	0.789	2.012	threading_9	------------------------P---LTFVFSFLLLVLFLFIFLTLSNMIFEQI------------TEDFSGLVKAAGRSVISSIFLSLYAGFLATLLALLLGAPTGYILARF-DFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLE-----------------SYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRFISY-GLSASRPIAVLLILVTLSIFLVIR--------
10	SPARKS	3d31c	0.154	0.789	5.646	threading_10	---------------------------PLTFVFSFLLLVLFLFIFLTLSNMIFEQI------------TEDFSGLVKAANRSVISSIFLSLYAGFLATLLALLLGAPTGYILARF-DFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPL-----------------ESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRFIS-YGLSASRPIAVLLILVTLSIFLVIR--------

Predicted Tertiary Structure


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TM-score=0.855 to 2onkC SCOP code=f.58.1.1	TM-score=0.822 to 2onkC SCOP code=f.58.1.1	TM-score=0.829 to 2onkC SCOP code=f.58.1.1	TM-score=0.836 to 2onkC SCOP code=f.58.1.1	TM-score=0.840 to 2onkC SCOP code=f.58.1.1