Template-based Modeling Results for YDCS_ECOLI

Submitted Primary Sequence

>Length 381
MSKTFARSSLCALSMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEMVSLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKTLDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPDSWQVVFVEQNLPDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRAQHSLIHRYWHDTTVQMSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFGSLPVVPEGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKTFARSSLCALSMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEMVSLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKTLDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPDSWQVVFVEQNLPDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRAQHSLIHRYWHDTTVQMSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFGSLPVVPEGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHHCHHCCCCCCEEEEEEEEEEEEEEEEHHHCCCCCCCHHHHCCHHHCCCHHHCCCCEEECCCHHHHHHHHHHHHCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCHHHEEEECCCHHHHHHHHCCCEEEEEECHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKTFARSSLCALSMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEMVSLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKTLDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPDSWQVVFVEQNLPDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRAQHSLIHRYWHDTTVQMSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFGSLPVVPEGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR
423110200000000000000012232323333120000001110231112211200230143130101021022122000002511000000001002200224201301222021031013300301212122210000000000000000321422230031002332123132130200011011100000010200112112312232133102101300321222011011122200100323100000000110010232232010000331000000000011304112001200100010300010021011110023003213211330031222210211001302123213022112002102112234
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSKTFARSSLCALSMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEMVSLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKTLDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPDSWQVVFVEQNLPDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRAQHSLIHRYWHDTTVQMSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFGSLPVVPEGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR
1	MUSTER	1poy1	0.219	0.837	2.860	threading_1	--------------------------------NNTLYFYNWTEYVPP-------GLLEQFTKETGIKVIYSTYESNETMYAKLKTGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNK--PFDPNNDYSIPYIWGATAIGVNGDAVDKSVTSWADLWKPE-------YKGSLLLTDDAREVFQMALRKLGY-------SGNTTDPKEIEAAYNELKKLMPNVAAFNSDN--PANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLL----SPEVANDKTLYPDAETIKNGEWQNDVG-AASSIYEEYYQKLKAGR
2	SPARKS	1a99a	0.227	0.856	4.655	threading_2	--------------------------------QKTLHIYNWSDYIAP-------DTVANFEKETGIKVVYDVFDSNEVLEGKLMAGGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVNAPVDSWDLILKPENLEKLK--SCGVSFLDAPEEVFATVLNYLGK-------DPNSTKADDYGPATDLLLKLRPNIRYF--HSSQYINDLANGDICVAIGWAGDVWQASNRGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVS----AEVRENPGIYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKSG-
3	PROSPECT2	2v84A	0.176	0.822	4.371	threading_3	---------------------------------DVLYLYNWTYYTPT-------SLIKKFEQQYNVQVVYDDYASNEDMFAKLSIGGYDLVVPSGDFVSIMKRKHLLEKIDLSKIPNVQFIKESVRARI-AYDPKMEYSVPYYLGAAGIAVNKKAVPSYARTWSIFSRKD-------LAYRMSMMDDMREVMGAALASLG-------YNVNTKNEQELAQAAIVTDHWKPNLVKFDSDG--YAKSFASGDFVVAHGFAEAFFAEEAMHEHIDFFIPQDASPVYVDSFCIPKGARNRDLAHAFINFFLEPAHYAEFLDTFGFPSTIHREAAA---------YQKKTPYYSEHDLERGTLKTDVG-AAIEHYNAHWNAVRF-R
4	PPA-I	1poy1	0.216	0.837	4.104	threading_4	--------------------------------NNTLYFYNWTEYVPP-------GLLEQFTKETGIKVIYSTYESNETMYAKLKTYKYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNK--PFDPNNDYSIPYIWGATAIGVNGDAVDKSVTSWADLWKPE-------YKGSLLLTDDAREVFQMALRKLGY-------SGNTTDPKEIEAAYNELKKLMPNVAAFNSDN--PANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLLS----PEVANDKTLYPDAETIKNGEWQNDVGA-ASSIYEEYYQKLKAGR
5	HHPRED-l	1a99_A	0.217	0.845	2.174	threading_5	--------------------------------QKTLHIYNWSDYIAP-------DTVANFEKETGIKVVYDVFDSNEVLEGKLMAGGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGEWDLILKPENLEKLKS--CGVSFLDAPEEVFATVLNYLG-------KDPNSTADDYTGPATDLLLKLRPNIRY--FHSSQYINDLANGDICVAIGWAGDVWQASNRGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPL---VSAEVREIYPADVRAKLF-TLKVQDPKI----DRVRTRAWTKVKSG-
6	HHPRED-g	1a99_A	0.233	0.856	2.710	threading_6	--------------------------------QKTLHIYNWSDYIAP-------DTVANFEKETGIKVVYDVFDSNEVLEGKLMAGGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAPVDSWDLILKPENLEKLKS--CGVSFLDAPEEVFATVLNYLGK-------DPNSTKADDYTPATDLLLKLRPNIRYF--HSSQYINDLANGDICVAIGWAGDVWQASNNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATP----LVSAEVRENPGIYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKSG-
7	SP3	1a99a	0.227	0.856	4.679	threading_7	--------------------------------QKTLHIYNWSDYIAP-------DTVANFEKETGIKVVYDVFDSNEVLEGKLMAGGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAPVDSWDLILKPENLEKLK--SCGVSFLDAPEEVFATVLNYLG-------KDPNSTKADDYGPATDLLLKLRPNIRYFHSSQ--YINDLANGDICVAIGWAGDVWQASNRGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVS----AEVRENPGIYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKSG-
8	SAM-T99	1poy1	0.219	0.837	6.586	threading_8	--------------------------------NNTLYFYNWTEYVPP-------GLLEQFTKETGIKVIYSTYESNETMYAKLKTGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKP--FDPNNDYSIPYIWGATAIGVNGDAVDKSVTSWADLWKPEY-------KGSLLLTDDAREVFQMALRKLGY-------SGNTTDPKEIEAAYNELKKLMPNVAAFNSD--NPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLLS----PEVANDKTLYPDAETIKNGEWQNDVG-AASSIYEEYYQKLKAGR
9	MUSTER	1a99A	0.230	0.856	2.843	threading_9	--------------------------------QKTLHIYNWSDYIAP-------DTVANFEKETGIKVVYDVFDSNEVLEGKLMAGGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAPVDSWDLILKPENLEKLK--SCGVSFLDAPEEVFATVLNYLGK-------DPNSTKADDYGPATDLLLKLRPNIRYFHSS--QYINDLANGDICVAIGWAGDVWQASNRGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATP----LVSAEVRENPGIYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKSG-
10	SPARKS	1pot_	0.211	0.835	4.451	threading_10	--------------------------------NNTLYFYNWTEYVPP-------GLLEQFTKETGIKVIYSTYESNETMYAKLKTYKYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNK--PFDPNNDYSIPYIWGATAIGVNGDAVDKSVTSWADLWKPEY-------KGSLLLTDDAREVFQMALRKLGY-------SGNTTDPKEIEAAYNELKKLMPNVAAF--NSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLLS----PEVANDKTLYPDAETIKNGEWQNDVG-AASSIYEEYYQKLKAG-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.908 to 1poy1 SCOP code=c.94.1.1	TM-score=0.900 to 1a99A SCOP code=c.94.1.1	TM-score=0.902 to 1a99A SCOP code=c.94.1.1	TM-score=0.807 to 1poy1 SCOP code=c.94.1.1	TM-score=0.907 to 1poy1 SCOP code=c.94.1.1