Template-based Modeling Results for YDCO_ECOLI

Submitted Primary Sequence

>Length 391
MRLFSIPPPTLLAGFLAVLIGYASSAAIIWQAAIVAGATTAQISGWMTALGLAMGVSTLTLTLWYRVPVLTAWSTPGAALLVTGLQGLTLNEAIGVFIVTNALIVLCGITGLFARLMRIIPHSLAAAMLAGILLRFGLQAFASLDGQFTLCGSMLLVWLATKAVAPRYAVIAAMIIGIVIVIAQGDVVTTDVVFKPVLPTYITPDFSFAHSLSVALPLFLVTMASQNAPGIAAMKAAGYSAPVSPLIVFTGLLALVFSPFGVYSVGIAAITAAICQSPEAHPDKDQRWLAAAVAGIFYLLAGLFGSAITGMMAALPVSWIQMLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASGLTLVGIGSAFWGLIAGGVCYVVLNLIADRNRY
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRLFSIPPPTLLAGFLAVLIGYASSAAIIWQAAIVAGATTAQISGWMTALGLAMGVSTLTLTLWYRVPVLTAWSTPGAALLVTGLQGLTLNEAIGVFIVTNALIVLCGITGLFARLMRIIPHSLAAAMLAGILLRFGLQAFASLDGQFTLCGSMLLVWLATKAVAPRYAVIAAMIIGIVIVIAQGDVVTTDVVFKPVLPTYITPDFSFAHSLSVALPLFLVTMASQNAPGIAAMKAAGYSAPVSPLIVFTGLLALVFSPFGVYSVGIAAITAAICQSPEAHPDKDQRWLAAAVAGIFYLLAGLFGSAITGMMAALPVSWIQMLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASGLTLVGIGSAFWGLIAGGVCYVVLNLIADRNRY
CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRLFSIPPPTLLAGFLAVLIGYASSAAIIWQAAIVAGATTAQISGWMTALGLAMGVSTLTLTLWYRVPVLTAWSTPGAALLVTGLQGLTLNEAIGVFIVTNALIVLCGITGLFARLMRIIPHSLAAAMLAGILLRFGLQAFASLDGQFTLCGSMLLVWLATKAVAPRYAVIAAMIIGIVIVIAQGDVVTTDVVFKPVLPTYITPDFSFAHSLSVALPLFLVTMASQNAPGIAAMKAAGYSAPVSPLIVFTGLLALVFSPFGVYSVGIAAITAAICQSPEAHPDKDQRWLAAAVAGIFYLLAGLFGSAITGMMAALPVSWIQMLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASGLTLVGIGSAFWGLIAGGVCYVVLNLIADRNRY
5542211111000000000020001000001003213022210000000000000000000000130100000000000000100320112200000000000000000000013005100310000100000030002001002110100000000000011001100000000000000001120212301020110000012010010010000000010022102000002013120200100000000000000000000000000000021330332432210000000000000000010000002101220020000000010000001201323330100000000001200000000000000000000001111233344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRLFSIPPPTLLAGFLAVLIGYASSAAIIWQAAIVAGATTAQISGWMTALGLAMGVSTLTLTLWYRVPVLTAWSTPGAALLVTGLQGLTLNEAIGVFIVTNALIVLCGITGLFARLMRIIPHSLAAAMLAGILLRFGLQAFASLDGQFTLCGSMLLVWLATKAVAPRYAVIAAMIIGIVIVIAQGDVVTTDVVFKPVLPTYITPDFSFAHSLSVALPLFLVTMASQNAPGIAAMKAAGYSAPVSPLIVFTGLLALVFSPFGVYSVGIAAITAAICQSPEAHPDKDQRWLAAAVAGIFYLLAGLFGSAITGMMAALPVSWIQMLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASGLTLVGIGSAFWGLIAGGVCYVVLNLIADRNRY
1	MUSTER	3qe7A	0.180	0.910	1.100	threading_1	-RAIGVSLQTIPLSLQHLFAMFGATVLVPVL-----HIN-------PATVLLFNGIGTLLYLFICKIPAYLGSSFAFISPVLLLL-PLGYEVALGGFIMCGVLFCLVSFIVKKTGWLDVLPPAAMGAIVAVIGLELAGVAAGMASKTIIISITTLAVTVLGSVLFRIIPILIGVLVGYALSFAMGIVDTTPII--FALPTLYTPRFEWFAILTILPAALVVIAEHV-LVVTANIVKKDLDPGLHRSMFANGLSTVISGFFGSYGENIGVMAIT-VYS----------TWVIGGAAIFAILLSCV-GKLAAAIQMIP-LPVMGGVSLLLYGVIGASGIRVLIKAQNLILTSVILIIGVSGAKVAELKGMALATIVGIGLSLIFKLIS-----
2	SPARKS	3qe7a	0.187	0.928	2.609	threading_2	IGV-SERPPTIPLSLQHLFAMFGATVLVPVL----FHINP-------ATVLLFNGIGTLLYLFKGKIPAYLGSSFAFISPVLL-LLPLGYEVALGGFIMCGVLFCLVSFIVKTGWLDVLFPPAAMGAIVAVIGLELAGVAAGDSKTIIISITTLAVTVLGSRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAFALPTLYTPRFEWFAILTIL-PAALVVIAEH-VGHLVVTANVKRDPGLHRSMFANGLSTVISGFFGSYGENIGVMAITRVYS----------TWVIGGAAIFAILLSCV-GKLAAAIQMIP-LPVMGGVSLLLYGVIGASGIRVLIENKAQNLILTSVILIIGSGAKVNIGAELKGMALATIVGIGLSLIFKLIS-
3	PROSPECT2	1jdha	0.097	0.949	1.821	threading_3	AVVNLIRIPELTKLLRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK----------SGGIPALVKMLGSPVDSVLFYAITTLHNLVRLAGGLQKMVALLNKTNVKFLAITTDCLGPQALVNIMRTYTYEKLLWTTSRVLKVLNKPAIVEAGGMQALGCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAA-GILSNLTCNNYKNKMMVCQVG---------GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVPLIKATVGLIRNLALCPANHAPLRRMEEIVEGCTGALHILARDVHNRIVIIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGA
4	PPA-I	3qe7A	0.175	0.921	1.730	threading_4	-RAIGVSLQTIPLSLQHLFAMFGATVLVPVLF----HIN-------PATVLLFNGIGTLLYLFICKIPAYLGSSFAFISPVLLLLP-LGYEVALGGFIMCGVLFCLVSFIVKKTGWLDVLPPAAMGAIVAVIGLELAGVAAGMASKTIIISITTLAVTVLGSVLFRIIPILIGVLVGYALSFAMGIVDTTPIINAFALPTLYTPRFEWFAILTILPAALVVIAEHV-GHLVVTANIVKRDPGLHRSMFANGLSTVISGFFGSYGENIGVMAITRVYS----------TWVIGGAAIFAILLSCV-GKLAAAIQMIP-LPVMGGVSLLLYGVIGASGIRVLIKAQNLILTSVILIIGVSGAKVAELKGMALATIVGIGLSLIFKLIS-----
5	HHPRED-l	3qe7_A	0.178	0.936	5.413	threading_5	IGVSERPLQTIPLSLQHLFAMFGATVLVPVL----FHINPA-------TVLLFNGIGTLLYLFIGKIPAYLGSSAFISPVLLLL-PL-GYEVALGGFIMCGVLFCLVSFIVKTGWLDVLFPPAAMGAIVAVILAGVAAGMAGPASKTIIISITTLAVTVLGSVFLAIIPILIGVLVGYALSFAMGIVDTTPIIHWFALPTLYTPRFEWFAILTI-LPAALVVIA-EHVGHLVTANIVKLDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAIT---RVYS-TWV-IGGAAIFAILLSCV-GKLAAAIQMIPLPVMGG-VSLLLYGVIGASIRVLIVDYNAQNLILTILIIGVS-GAKVNIGA-AEGMALATIVGIGLSLIFKLIS-
6	HHPRED-g	3qe7_A	0.184	0.916	6.354	threading_6	IGVSERPPQTIPLSLQHLFAMFGATVLVPVL----FHINPA-------TVLLFNGIGTLLYLFKGKIPAYLGSSAFISPVLLLLPL--GYEVALGGFIMCGVLFCLVSFIVKTGWLDVLFPPAAMGAIVAVILAGVAAGMAGPASKTIIISITTLAVTVLGRGFLAIIPILIGVLVGYALSFAMGIVDTTPIIHWFALPTLYTPRFEWFAILTI-LPAALVVIA-EHVGHLVTANIVKKDPGLHRSMFANGLSTVISGFFGSTPENIGVMAITRV---------YSTWV-IGGAAIFAILLSCVG-KLAAAIQMIPLPVMGG-VSLLLYGVIGSGIRVLIVDYNAQNLILTSVIIIGVSGAKVNIGA-AEGMALATIVGIGLSLIS-----
7	SP3	3qe7a	0.188	0.926	0.537	threading_7	-RAIGVSLQTIPLSLQHLFAMFGATVLVPVL----FHIN-------PATVLLFNGIGTLLYLFKGKIPAYLGSSFAFISPVLLLLPLG-YEVALGGFIMCGVLFCLVSFIVKKGWLDVLFPPAAMGAIVAVIGLELAGVAAGMASKTIIISITTLAVTVLGSVLLAIIPILIGVLVGYALSFAMGIVDTTPIINAFALPTLYTPRFEWFAILTIL-PAALVVIAEH-VGHLVVTANIVRDPGLHRSMFANGLSTVISGFFGSYGENIGVMAITRVYS----------TWVIGGAAIFAILLSCV-GKLAAAIQMIP-LPVMGGVSLLLYGVIGASGIRVLIESKKAQNLILTSVILIIGVAKVNIGAALKGMALATIVGIGLSLIFKLS--
8	SAM-T99	1ydmB	0.182	0.350	0.784	threading_8	----------------------------------------------LEALSALSNEDILQKTERYKY------------------------------------------------------------------------------------------------------------------------------------LFSLPEW-------------------QNAGTIAVTISRGLEIPTRPVIE--------QAWEEGKQVCI----------PKCHPDTKKQFRTYQTDDQLETVYAGLLEPVIKTKEVNPSQIDLIVPGV-----------------------------------CFDVNGFRVGFGGGYYDRYLSEYEGK----
9	MUSTER	3gi9C	0.120	0.936	0.871	threading_9	LKNKKLSLWEAVSMAVGVMIG-ASIFSIFGVGAKIAG--RNLPETFILSGIYALLVAYSYTKLGAKIV----SNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLIAITEIGIVAFFTALNGSKAVGRAEFFIVLVKLLILGLFIFAGLITPSAVSGMIFASAIFFLSYMGFGVITNASEHIEPKKNVP---RAIFISILIVMFVYVGVAI-NALAVAAKPFLGN-LGFLLISIGALFSISSAMNATI---GANVAYSLAKGPEERKVWFKSTEGLYITSALGVLFALLF----------NMEGVASITSAVFMVIYLFVILSHYIVGGRKEIVIFSFIVVLGVFLLLVFYGIIATFIGVLIFEIIYRKVTKRSNN
10	SPARKS	2j1dg	0.090	0.767	0.978	threading_10	LSVIDGRRAQNCNILLSRL-----------------KLSNDEIKRAILTMDEQEDLPKDMLEQLLKFV-----PEKSDIDLLEEHKH-ELDR-------------MAKADRFLFEMSR-INQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFR-------SGALKQLLEVVLAFGNYMNKGQRGNAY-------------GFKISSLNKIALLHYLITIVENKYPSVLNLNEE-----LRDIPQAAKVMTELDKEISTLRSGLKAVETELEYQKSQPPQPGDK----------------FVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEE-------------AGKIQPDEFFGIFDQFLQAVSEAKQENENMRKKKE

Predicted Tertiary Structure


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TM-score=0.428 to 2q6hA SCOP code=f.54.1.1	TM-score=0.840 to 1kpkA SCOP code=f.20.1.1	TM-score=0.427 to 2q6hA SCOP code=f.54.1.1	TM-score=0.592 to 1wa5B SCOP code=a.118.1.1	TM-score=0.427 to 2q6hA SCOP code=f.54.1.1