Template-based Modeling Results for YDCK_ECOLI

Submitted Primary Sequence

>Length 326
MRKYRLSEEQRAFSYQEDGTKKNVLLRQIIAISDFNDVIAGTAGGWIDRETVLAQEGNCWIYDQNAIAFGGAVISGNTRITGTSVLWGEVYATDNVWIDNSEISQGAYISDSVTIHDSLVYGQCRIFGHALIDQHSMIVAAQGLTPDHQLLLQIYDRARVSASRIVHQAQIYGDAVVRYAFIEHRAEVFDFASIEGNEENNVWLCDCAKVYGHAQVKAGIEEDAIPTIHYSSQVAEYAIVEGNCVLKHHVLVGGNAVVRGGPILLDEHVVIQGESRITGAVIIENHVELTDHAVVEAFDGDTVHVRGPKVINGEERITRTPLAGLL
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRKYRLSEEQRAFSYQEDGTKKNVLLRQIIAISDFNDVIAGTAGGWIDRETVLAQEGNCWIYDQNAIAFGGAVISGNTRITGTSVLWGEVYATDNVWIDNSEISQGAYISDSVTIHDSLVYGQCRIFGHALIDQHSMIVAAQGLTPDHQLLLQIYDRARVSASRIVHQAQIYGDAVVRYAFIEHRAEVFDFASIEGNEENNVWLCDCAKVYGHAQVKAGIEEDAIPTIHYSSQVAEYAIVEGNCVLKHHVLVGGNAVVRGGPILLDEHVVIQGESRITGAVIIENHVELTDHAVVEAFDGDTVHVRGPKVINGEERITRTPLAGLL
CCCEECCCHHHHHHEEECCCCCCEEEEEEEEEECCCCCCCCCCCCEEECHHHCCCCCCEEEECCCCEEECCCEECCCCEEECCCEEECCEEEECCEEECCEEEECCEEEECCCEEECCEEECCEEEECCCEECCCCEEEECCEEECCCEECCEECCCEEECCCEEECCEEEECCCEECCCEEECCEEECCCEEEECCEECCEEEECCCEEECCEEEECCEEECCEEEEECCCEECCCCEEECCCEEECEEEECCCEEEECCEEEECCCEEECCCEEECCCEEECCCEEECCCEEEEEECCCEEEECCCCEECCCCCCCCCCCCCCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRKYRLSEEQRAFSYQEDGTKKNVLLRQIIAISDFNDVIAGTAGGWIDRETVLAQEGNCWIYDQNAIAFGGAVISGNTRITGTSVLWGEVYATDNVWIDNSEISQGAYISDSVTIHDSLVYGQCRIFGHALIDQHSMIVAAQGLTPDHQLLLQIYDRARVSASRIVHQAQIYGDAVVRYAFIEHRAEVFDFASIEGNEENNVWLCDCAKVYGHAQVKAGIEEDAIPTIHYSSQVAEYAIVEGNCVLKHHVLVGGNAVVRGGPILLDEHVVIQGESRITGAVIIENHVELTDHAVVEAFDGDTVHVRGPKVINGEERITRTPLAGLL
55322123332111112222441000100000011330221211010121210133120000132000010000012020012000011010020010210100200100210001100000102000200013101000010002201110201320100210001300010210021000123010131000201121301001102001101022001111000002001003101011200011000011100011000002310001110100000002210200220002011021000212210103331230222124
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRKYRLSEEQRAFSYQEDGTKKNVLLRQIIAISDFNDVIAGTAGGWIDRETVLAQEGNCWIYDQNAIAFGGAVISGNTRITGTSVLWGEVYATDNVWIDNSEISQGAYISDSVTIHDSLVYGQCRIFGHALIDQHSMIVAAQGLTPDHQLLLQIYDRARVSASRIVHQAQIYGDAVVRYAFIEHRAEVFDFASIEGNEENNVWLCDCAKVYGHAQVKAGIEEDAIPTIHYSSQVAEYAIVEGNCVLKHHVLVGGNAVVRGGPILLDEHVVIQGESRITGAVIIENHVELTDHAVVEAFDGDTVHVRGPKVINGEERITRTPLAGLL
1	MUSTER	2pigB	0.646	0.963	3.228	threading_1	--KYRLSEGPRAFTYQVDGEKKSVLLRQVIAVTDFNDVKAGTSGGWVDADNVLSQQGDCWIYD-ENAAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQ--------ILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAF-DNTIHLRGPKVINGEDRITRTPLVGSL
2	SPARKS	2f9ca	0.650	0.982	5.326	threading_2	--KYRLSEGPRAFTYQVDGEKKSVLLRQVIAVTDFNDVKAGTSGGWVDADNVLSQQGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDNTIHLRGPKVINGEDRITRTPL----
3	PROSPECT2	2f9cA	0.650	0.982	4.280	threading_3	--KYRLSEGPRAFTYQVDGEKKSVLLRQVIAVTDFNDVKAGTSGGWVDADNVLSQQGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDNTIHLRGPKVINGEDRITRTPL----
4	PPA-I	2pigB	0.643	0.963	5.529	threading_4	--KYRLSEGPRAFTYQVDGEKKSVLLRQVIAVTDFNDVKAGTSGGWVDADNVLSQQGDCWIYD-ENAAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQ--------ILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIA-FDNTIHLRGPKVINGEDRITRTPLVGSL
5	HHPRED-l	2pig_A	0.650	0.948	6.510	threading_5	--KYRLSEGPRAFTYQVDGEKKSVLLRQVIAVTDFNDVKAGTSGGWVDADNVLSQQGDCWIYDENA-AFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILA--------AQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDNTIHLRGPKVINGEDRITRT------
6	HHPRED-g	2iu8_A	0.156	0.926	4.231	threading_6	MSTYSLEQLADFLKVEFQGNGAT----LLSGVEEIEEAKTAHIT-FLDNEKYAKSSEAGAIIISRTQRNKNLITSESPSFQKCLELFITVDSGFPGIHPTAVIHPTAIIEDHVCIEPYAVVCHAHVGSACHIGSGSVIGAYSTVGEHSYIRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSHKHLKHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIVAQAGIAGSTKIGNH-------------------VIIGGQAGITGHICIADHVIMMAQTGVTKSITSPGIYGGAPARPYQEIHRQV
7	SP3	2f9ca	0.650	0.982	4.684	threading_7	--KYRLSEGPRAFTYQVDGEKKSVLLRQVIAVTDFNDVKAGTSGGWVDADNVLSQQGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDNTIHLRGPKVINGEDRITRTPL----
8	SAM-T99	2pigB	0.643	0.963	3.968	threading_8	--KYRLSEGPRAFTYQVDGEKKSVLLRQVIAVTDFNDVKAGTSGGWVDADNVLSQQGDCWIYD-ENAAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAI--------QILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAF-DNTIHLRGPKVINGEDRITRTPLVGSL
9	MUSTER	2iuaC	0.149	0.929	1.766	threading_9	QSTYSLEQLADFLKVEFQGNGAT----LLSGVEEIEEAKTAHI-TFLDNEKYAKHLKSS---EAGAIIISRTQFQKYRDLNKNFLITESPSLVFPGIHPTAVIHPTAIIEDHVCIEPYAVVCHAHVGSACHIGSGSVIGAYSTVGEHSYIHVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAFGQH------KHLKHLGKVIIEDDVEIGANTTIDRGRF--------KHSVVREGSKIDNLVQIAHQVEVGQHSMIVAQA-GIAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKSITSPGIYGGAPARPYQEIQVAK
10	SPARKS	3pmoa	0.130	0.917	4.830	threading_10	MSSYTLGQLAAHVGAEVRGDADLP----IQGLATLQEAGPAQLS-FLANPQYRKYLPES---RAGAVLLTADGFAGTALVVANSHLFDRKPKAAAGIHPTAIVAADAEVDPSASVGAYAVIEGARIGAGVSIGAHCVIGARSVIGEGGWLAVTLYHDVTIGARVSIQSGAVIGGEGFGFANEKGKIAQIGGVTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCML-------------------AGGVGLVGHIEICDNVFVTGMTMVTRSITEPGSYSGTAMQPAAEWKKSA

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.588 to 1j2zA SCOP code=b.81.1.1	TM-score=0.588 to 1j2zA SCOP code=b.81.1.1	TM-score=0.586 to 1j2zA SCOP code=b.81.1.1	TM-score=0.586 to 1j2zA SCOP code=b.81.1.1	TM-score=0.589 to 1j2zA SCOP code=b.81.1.1