Template-based Modeling Results for YDBC_ECOLI


  Submitted Primary Sequence

>Length 286
MSSNTFTLGTKSVNRLGYGAMQLAGPGVFGPPRDRHVAITVLREALALGVNHIDTSDFYGPHVTNQIIREALYPYSDDLTIVTKIGARRGEDASWLPAFSPAELQKAVHDNLRNLGLDVLDVVNLRVMMGDGHGPAEGSIEASLTVLAEMQQQGLVKHIGLSNVTPTQVAEARKIAEIVCVQNEYNIAHRADDAMIDALAHDGIAYVPFFPLGGFTPLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENMAAEKLHLSEEVLSTLDGISRE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSSNTFTLGTKSVNRLGYGAMQLAGPGVFGPPRDRHVAITVLREALALGVNHIDTSDFYGPHVTNQIIREALYPYSDDLTIVTKIGARRGEDASWLPAFSPAELQKAVHDNLRNLGLDVLDVVNLRVMMGDGHGPAEGSIEASLTVLAEMQQQGLVKHIGLSNVTPTQVAEARKIAEIVCVQNEYNIAHRADDAMIDALAHDGIAYVPFFPLGGFTPLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENMAAEKLHLSEEVLSTLDGISRE
CCCEEECCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECHHHCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSSNTFTLGTKSVNRLGYGAMQLAGPGVFGPPRDRHVAITVLREALALGVNHIDTSDFYGPHVTNQIIREALYPYSDDLTIVTKIGARRGEDASWLPAFSPAELQKAVHDNLRNLGLDVLDVVNLRVMMGDGHGPAEGSIEASLTVLAEMQQQGLVKHIGLSNVTPTQVAEARKIAEIVCVQNEYNIAHRADDAMIDALAHDGIAYVPFFPLGGFTPLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENMAAEKLHLSEEVLSTLDGISRE
5521212212120020010002010201111232231001002200310010000020012311020022003221310000000012223222122100121013001200320222000000000111223022302031002002202430101000002010210110241020000001111133212200300242200000000012121231210120032130100000000003223100001111212102200301303013300220221255
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSSNTFTLGTKSVNRLGYGAMQLAGPGVFGPPRDRHVAITVLREALALGVNHIDTSDFYGPHVTNQIIREALYPYSDDLTIVTKIGARRGEDASWLPAFSPAELQKAVHDNLRNLGLDVLDVVNLRVMMGDGHGPAEGSIEASLTVLAEMQQQGLVKHIGLSNVTPTQVAEARKIAEIVCVQNEYNIAHRADDAMIDALAHDGIAYVPFFPLGGFTPLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENMAAEKLHLSEEVLSTLDGISRE
1MUSTER1ynpB0.2500.9512.931threading_1MKKRQLGTSDLHVSELGFGCMSLG--------TDETKARRIMDEVLELGINYLDTADLYNQGLNEQFVGKALKGRRQDIILATKVGNRFEQGKGWWWDPSKAYIKEAVKDSLRRLQTDYIDLYQLHGGTID------DPIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRSNIVSIMMQYSILDRRPEEWFPLIQEHGVSVVVRGPVARGLLSRRDELKLLRESTDRPLHELALQYCLAHDVVATVAAGASSIDQVKANVQAVEAPLTAEERQHIQKLAKA
2SPARKS3erpa0.2120.9584.457threading_2MEYRRCGRSGVKLPAISLGLWHN-----FGDTTRVENSRALLQRAFDLGITHFDLANNYGPGSAECNFGRILQEWRDELIISTKAGYTMW-DGPYGDWGSRKYLIASLDQSLKRMGLEYVDIFYHHRPDPE------TPLKETMKALDHLVRHGKALYVGISNYPADLARQAIDITPCLIHQPKYSLFERWVEGLLALLQEKGVGSIAFSPLAGGQLTDRRRLNELAARRGQKLSQMALAWVLRNDNVTSVLIGASKPSQIEDAVGMLNRRFSAAECAEIDAILEG
3PROSPECT23n2tA0.2130.9693.942threading_3MASDTIRIPDTPLSRVALGTWAIGGW--MWGGPDDDNGVRTIHAALDEGINLIDTAPVYGFGHSEEIVGRALAEKPNKAHVATKLGLHWVGEDEKNMDSRPARIRKEVEDSLRRLRVETIDLEQIHWPDDK------TPIDESARELQKLHQDGKIRALGVSNFSPEQMDIFREVAPLATIQPPLNLFERTIEKILPYAEKHNAVVLAYGALGKMNRDTTDEFEKLAEKRGKSVMAFAVRWVLDQ-GPVIALWGARKPGQVSGVKDVFGWSLTDEEKKAVDDILAR
4PPA-I1ynpB0.2460.9514.988threading_4MKKRQLGTSDLHVSELGFGCMSLGT--------DETKARRIMDEVLELGINYLDTADLYNQGLNEQFVGKALKGRRQDIILATKVGNRFEQGEGWWWDPSKAYIKEAVKDSLRRLQTDYIDLYQLHGGTID------DPIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRSNIVSIMMQYSILDRRPEEWFPLIQEHGVSVVVRGPVARGLLSRRLKLLRESLPTDRPLHELALQYCLAHDVVATVAAGASSIDQVKANVQAVEATLTAEERQHIQKLAKA
5HHPRED-l1ynp_A0.2490.8992.779threading_5MKKRQLGTSDLHVSELGFGCMSLGT--------DETKARRIMDEVLELGINYLDTADLYNQGLNEQFVGKALKGRRQDIILATKV--------------SKAYIKEAVKDSLRRLQTDYIDLYQLHGGTIDD------PIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRSNIVSIMMQYSILDRRPEEWFPLIQEHGVSVVVRGPVARGLLSRRPKLLRESLPTDRPLHELALQYCLAHDVVATVAAGASSIDQVKANVQAVEAPLTAEERQHIQKLAK-
6HHPRED-g1pyf_A0.2550.9622.365threading_6-KKAKLGKSDLQVFPIGLGTNAVGGHN-LYPNLNEETGKELVREAIRNGVT-LDTAYIYGIGRSEELIGEVLREFREDVVIATKAAHRKQG-NDFVFDNSPDFLKKSVDESLKRLNTDYIDLFYIHFPDEH------TPKDEAVNALNE-KKAGKIRSIGVSNFSLEQLKEANKDGLVDVLQGEYNLLNREAETFFPYTKEHNISFIPYFPLVSGLLAGKNKLAPIAEKHNVDIPHIVLAWYLARPEIDILIPGAKRADQLIDNIKTADVTLSQEDISFIDKLFAP
7SP33erpa0.2120.9584.585threading_7MEYRRCGRSGVKLPAISLGLWHN-----FGDTTRVENSRALLQRAFDLGITHFDLANNYGPPSAECNFGRILQEDRDELIISTKAGYTM-WDGPYGDWGSRKYLIASLDQSLKRMGLEYVDIFYHHRPDPE------TPLKETMKALDHLVRHGKALYVGISNYPADLARQAIDITPCLIHQPKYSLFERWVEGLLALLQEKGVGSIAFSPLAGGQLTDRRRLNELAARRGQKLSQMALAWVLRNDNVTSVLIGASKPSQIEDAVGMLNRRFSAAECAEIDAILEG
8SAM-T991pz0A0.2550.9583.537threading_8-KKAKLGKSDLQVFPIGLGTNAVGGHNLY-PNLNEETGKELVREAIRNGVT-LDTAYIYGIGRSEELIGEVLREFREDVVIATKAAHRKQGND-FVFDNSPDFLKKSVDESLKRLNTDYIDLFYIHFPDE------HTPKDEAVNALNE-KKAGKIRSIGVSNFSLEQLKEANKDGLVDVLQGEYNLLNREAETFFPYTKEHNISFIPYFPLVSGLLAKVNKLAPIAEKHNVDIPHIVLAWYLARPEIDILIPGAKRADQLIDNIKTADVTLSQEDISFIDKLFA-
9MUSTER1pz0A0.2550.9622.882threading_9-KKAKLGKSDLQVFPIGLGTNAVGGHN-LYPNLNEETGKELVREAIRNGVTL-DTAYIYGIGRSEELIGEVLREFREDVVIATKAAHRK-QGNDFVFDNSPDFLKKSVDESLKRLNTDYIDLFYIHFPDEH------TPKDEAVNALNEK-KAGKIRSIGVSNFSLEQLKEANKDGLVDVLQGEYNLLNREEKTFFPYTKEHNISFIPYFPLVSGLLAGKNKLAPIAEKHNVDIPHIVLAWYLARPEIDILIPGAKRADQLIDNIKTADVTLSQEDISFIDKLFAP
10SPARKS1pyfa0.2510.9624.265threading_10-KKAKLGKSDLQVFPIGLGTNAVGGHNLY-PNLNEETGKELVREAIRNGVT-LDTAYIYGIGRSEELIGEVLREFREDVVIATKAAHRK-QGNDFVFDNSPDFLKKSVDESLKRLNTDYIDLFYIHFPDEH------TPKDEAVNALN-EKKAGKIRSIGVSNFSLEQLKEANKDGLVDVLQGEYNLLNREAETFFPYTKEHNISFIPYFPLVSGLLAGKNKLAPIAEKHNVDIPHIVLAWYLARPEIDILIPGAKRADQLIDNIKTADVTLSQEDISFIDKLFAP

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.869 to 1pz0A
SCOP code=c.1.7.1
TM-score=0.868 to 1pz0A
SCOP code=c.1.7.1
TM-score=0.837 to 1ur3M
SCOP code=c.1.7.1
TM-score=0.853 to 1pz0A
SCOP code=c.1.7.1
TM-score=0.867 to 1pz0A
SCOP code=c.1.7.1