Template-based Modeling Results for YDAM_ECOLI


  Submitted Primary Sequence

>Length 410
MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAAKLLMQDLTFSQLRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRKLTETEPVIIFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAALNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIVHDITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLAA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAAKLLMQDLTFSQLRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRKLTETEPVIIFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAALNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIVHDITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLAA
CCHHHHHHHHHCCCCEEEEECCCCEEEEECHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAAKLLMQDLTFSQLRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRKLTETEPVIIFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAALNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIVHDITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLAA
44230120121011000000123110000020003113112122122112222223102300210234331010000113433100102010120132320000210111011012112112223422100120131211000000012301000003001301202231004220220122133112002101223223220100021331211101000000212333000000000221331131011002112011010011012002200220233332000000001203101011001000100100030023002410000101121000002302231011002100200241212222200000000103234103200210020012023323310012
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMITHNFNTLDLLTSPVWIVSPFEEQLIYANSAAKLLMQDLTFSQLRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRKLTETEPVIIFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAALNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIVHDITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLAA
1MUSTER2v0nA0.2210.9611.677threading_1DIEANVRLLEAK------LTAEYYEVSTAMPTALAMAARDLPDII---LDVMMPGMDGFTVCRKLKDDPTTVVLITALDGRGDRIQGLESGASDFLTKP--IDDVMLFARVRSLTRFKLVIDELRQREASGRRMLDGLGGRVLIVDDNERQA-----QRVAAELGVEHRPVIESDPEKAKAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKAVNDILSRPDPQELSARVKTQIQRKRYTDYLRNNLDHDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGAHGREMLNVTISIGVSATAEGDTPEALLKRADEGVYQAKASGRNAVVGK
2SPARKS3i5aa0.2800.7594.036threading_2---------------------------------------------SAMVLLVDDQAMIGEAVRRGLAGHESIDFHFCADPHQA--------IAQAVQIKPTVILQDLVMPGLDGLTLVREYRSNPL----------TRDIPIIVLSTKEDPLIK---SAAFAA-GANDYLVKLPDNIELVARIRYHSRSYMTLLQRDEAYRALRVS--------------------------------QQQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRATRDQAQLSLLMIDVDYFKAYNDNFGHLEGDEALRQVAKAIRNSCRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGIAPVPGSSLTVSIGVATVTVGQHSRQLILDADKGLYLAKNNGRNQVAAG
3PROSPECT21w25A0.2320.9243.394threading_3SARLLEAKLTA----------EYYEVSTAMDGPTAL------AMAARVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLEASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREAERQAQRVAAELGVEHRPVIESDGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPDPDDRGRMVKALE---------------IGVNDILSRPIDPQELSARKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFREMLNVTISIGVSATGEGDTPEALLKRADEGVYQAKASGRNAVVGK
4PPA-I3pjwA10.2530.4243.061threading_4-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AALFQEQAERSEKLRTESYQDNLTGLANRRYFEMQLNARVSNPEQASS-GYLLLLRVKDLAGLNQRLGGQRTDELLKAVGEQLSRECETQNLVTRIRGGEFAVLAPGMTREEALQLAQSLDSALSSLYAATDVAAVASIGLAPFAHGDSPQAVLSLGDQALAQAEGQGEQNWACL
5HHPRED-l1w25_A0.2310.9415.145threading_5------------SARILVVDDEYYEVSTAMDTALAMAADLPDIILLDVMMPGMDGFTVCRKLKDDPTTHIPVVLITAL-DGRGDRI-------QGLESGASD-FLTKPIDDVLFARVRSLTRFKLVIDELRQRMGVIAGAAARL--DGLGGRVLIVDDNERQAQRSDPEKISAGPVDLAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRVNDILSRPIDPQEVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGPFVAGRLNVTISIGVSATAEGDTPEALLKRADEGVYQAKASGRNAVVG-
6HHPRED-g1w25_A0.2180.9513.770threading_6NVRLLEAKLTAEYY----------EVSTAMDGPTALA-MAARDLPDIILLDVMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDR---IQGLE-SG-ASDFLTKPVMLFARVRFKLVIDELRQREASGRRMGVIAGAAARLDG--LGGRVLIVDDNERQAQRVAAEKISAGGPVDLAAKNFDGL--RFTAALRSEERTRPVLAMVDPDDRGRVNDILSRPIDPQELKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSSPFTVARLNVTISIGVSATAEGDTPEALLKRADEGVYQAKASGRNAVVGK
7SP31w25a0.2040.9564.226threading_7DGPTALAMAARDLPDIILLDGMDGRKLKDDPTTRHITALDGRGDRIQGLESPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLI--------VDDNERQAQRVAAELGVEHRPVIESDPEKAKISA-GGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLP---------VLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFREMLNVTISIGVSATAEGDTPEALLKRADEGVYQAKASGRNAVVGK
8SAM-T992v0nA0.2570.8074.342threading_8------------SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALD------GRGDRIQGLESGASDFL-----------------------------------------------------------TKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVDDNERQAQRVAAELGELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFREMLNVTISIGVSATAGGDTPEALLKRADEGVYQAKASGRNAVV--
9MUSTER3breB0.2470.7511.587threading_9-----------APL------DGAVMVLLVD-----------------------DQAMIGEAVRRSLASEAGIDFHFCSDPQQA--------VAVANQIKPTVILQDLVMP---GVDGLTLLAAYRGNPA-------TRDIPIIVLSTKEEPTVK---SAAFAA-LPDAIELVARIRYHSRSYIALQQRDEAYRALRES----------------------------------------QQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESDQPRPGSHLTVSIGVSTLGGGQTFRVLIEMADQALYQAKNNGRNQVGLM
10SPARKS1w25a0.2300.9243.976threading_10VCRKLKDDPTTRHIPVVLITALDGR-----GDRIQGLESGASDFLTKPI----DDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVD---------DNERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTVLAMVDPDDRGRMVKALEIGVND-----ILSRPIDPQELSARV--------KTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFREMLNVTISIGVSATAEGDTPEALLKRADEGVYQAKASGRNAVVGK

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.640 to 2v0nA
SCOP code=c.23.1.1
TM-score=0.766 to 2v0nA
SCOP code=c.23.1.1
TM-score=0.600 to 2v0nA
SCOP code=c.23.1.1
TM-score=0.644 to 2v0nA
SCOP code=c.23.1.1
TM-score=0.573 to 2v0nA
SCOP code=c.23.1.1