Template-based Modeling Results for YCJY_ECOLI

Submitted Primary Sequence

>Length 306
MMNNKVSFTNSNNPTISLSAVIYFPPKFDETRQYQAIVLSHPGGGVKEQTAGTYAKKLAEKGFVTIAYDASYQGESGGEPRQLENPYIRTEDISAVIDYLTTLSYVDNTRIGAMGICAGAGYTANAAIQDRRIKAIGTVSAVNIGSIFRNGWENNVKSIDALPYVEAGSNARTSDISSGEYAIMPLAPMKESDAPNEELRQAWEYYHTPRAQYPTAPGYATLRSLNQIITYDAYHMAEVYLTQPTQIVAGSQAGSKWMSDDLYDRASSQDKRYHIVEGANHMDLYDGKAYVAEAISVLAPFFEETL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MMNNKVSFTNSNNPTISLSAVIYFPPKFDETRQYQAIVLSHPGGGVKEQTAGTYAKKLAEKGFVTIAYDASYQGESGGEPRQLENPYIRTEDISAVIDYLTTLSYVDNTRIGAMGICAGAGYTANAAIQDRRIKAIGTVSAVNIGSIFRNGWENNVKSIDALPYVEAGSNARTSDISSGEYAIMPLAPMKESDAPNEELRQAWEYYHTPRAQYPTAPGYATLRSLNQIITYDAYHMAEVYLTQPTQIVAGSQAGSKWMSDDLYDRASSQDKRYHIVEGANHMDLYDGKAYVAEAISVLAPFFEETL
CCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MMNNKVSFTNSNNPTISLSAVIYFPPKFDETRQYQAIVLSHPGGGVKEQTAGTYAKKLAEKGFVTIAYDASYQGESGGEPRQLENPYIRTEDISAVIDYLTTLSYVDNTRIGAMGICAGAGYTANAAIQDRRIKAIGTVSAVNIGSIFRNGWENNVKSIDALPYVEAGSNARTSDISSGEYAIMPLAPMKESDAPNEELRQAWEYYHTPRAQYPTAPGYATLRSLNQIITYDAYHMAEVYLTQPTQIVAGSQAGSKWMSDDLYDRASSQDKRYHIVEGANHMDLYDGKAYVAEAISVLAPFFEETL
552120202123332010100000034234233000000001011122200010021004300000000011213121212213102110200100020013122113210000000100000000012133020000001011010022013322211101110210011111111213211122022332212132022002112122121220212112200110121102200221121000000023101221011002302331220000210100001203210120022002102422
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MMNNKVSFTNSNNPTISLSAVIYFPPKFDETRQYQAIVLSHPGGGVKEQTAGTYAKKLAEKGFVTIAYDASYQGESGGEPRQLENPYIRTEDISAVIDYLTTLSYVDNTRIGAMGICAGAGYTANAAIQDRRIKAIGTVSAVNIGSIFRNGWENNVKSIDALPYVEAGSNARTSDISSGEYAIMPLAPMKESDAPNEELRQAWEYYHTPRAQYPTAPGYATLRSLNQIITYDAYHMAEVYLTQPTQIVAGSQAGSKWMSDDLYDRASSQDKRYHIVEGANHMDLYDGKAYVAEAISVLAPFFEETL
1	MUSTER	2hdwA	0.341	0.977	2.362	threading_1	VEHRKVTFANR--YGITLAADLYLPKNRGGD-RLPAIVIGGPFGAVKEQSSGLYAQTMAERGFVTLAFDPSYTGESGGQPRNVASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRVKAVVTSTMYDMTRVMSKGYNDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPP-YNELKGGEAQFLVDYHDYYMTPRGYHPRAVNAWTMTTPLSFMNMPILTYIKEISPRPILLIHGERAHSRYFSETAYAAA-AEPKELLIVPGASHVDLYDRLDRI--PFDRIAGFFDEHL
2	SPARKS	2hdwa	0.334	0.977	3.844	threading_2	VEHRKVTFANRYGI--TLAADLYLPKNRGG-DRLPAIVIGGPFGAVKEQSSGLYAQTMAERGFVTLAFDPSYTGESGGQPRNVASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRVKAVVTSTMYDMTRVMSKGYNDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPY-NELKGGEAQFLVDYHDYYMTPRGYHPRSGNAWTMTTPLSFMNMPILTYIKEISPRPILLIHGERAHSRYFSETAYAAA-AEPKELLIVPGASHVDLYDRLDRI--PFDRIAGFFDEHL
3	PROSPECT2	2hdwA	0.334	0.977	3.901	threading_3	VEHRKVTFANRYGI--TLAADLYLPKN-RGGDRLPAIVIGGPFGAVKEQSSGLYAQTMAERGFVTLAFDPSYTGESGGQPRNVASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRVKAVVTSTMYDMTRVMSKGYNDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELK-GGEAQFLVDYHDYYMTPRGYHPRAVNSGNMTTPLSFMNMPILTYIKEISPRPILLIHGERAHSRYFSETAYAAA-AEPKELLIVPGASHVDLYDRLDRI--PFDRIAGFFDEHL
4	PPA-I	2hdwA	0.341	0.977	2.309	threading_4	VEHRKVTFANRY--GITLAADLYLPKNR-GGDRLPAIVIGGPFGAVKEQSSGLYAQTMAERGFVTLAFDPSYTGESGGQPRNVASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRVKAVVTSTMYDMTRVMSKGYNDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELK-GGEAQFLVDYHDYYMTPRGYHPRAVNAWTMTTPLSFMNMPILTYIKEISPRPILLIHGERAHSRYFSETAYAAA-AEPKELLIVPGASHVDLYDRLDRI--PFDRIAGFFDEHL
5	HHPRED-l	2hdw_A	0.336	0.974	1.958	threading_5	VEHRKVTFANRY--GITLAADLYLPKNRG-GDRLPAIVIGGPFGAVKEQSSGLYAQTMAERGFVTLAFDPSYTGESGGQPRNVASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRVKAVVTSTMYDMTRVMSKGYNDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGG-EAQFLVDYHDYYMTPRGYHPRSGNAWTMTTPLSFMNMPILTYIKEISPRPILLIHGERAHSRYFSETAYAAAA-EPKELLIVPGASHVDLYDRLDRI--PFDRIAGFFDEH-
6	HHPRED-g	2hdw_A	0.341	0.977	3.031	threading_6	VEHRKVTFANRY--GITLAADLYLPKNR-GGDRLPAIVIGGPFGAVKEQSSGLYAQTMAERGFVTLAFDPSYTGESGGQPRNVASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRVKAVVTSTMYDMTRVMSKGYNDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPY-NELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGTMTTPLSFMNMPILTYIKEISPRPILLIHGERAHSRYFSETAYAAA-AEPKELLIVPGASHVDLYDRLDRI--PFDRIAGFFDEHL
7	SP3	2hdwa	0.341	0.977	3.810	threading_7	VEHRKVTFANRYG--ITLAADLYLPKNRGG-DRLPAIVIGGPFGAVKEQSSGLYAQTMAERGFVTLAFDPSYTGESGGQPRNVASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRVKAVVTSTMYDMTRVMSKGYNDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPY-NELKGGEAQFLVDYHDYYMTPRGYHPRAVNAWTMTTPLSFMNMPILTYIKEISPRPILLIHGERAHSRYFSETAYAAA-AEPKELLIVPGASHVDLYDRLDRI--PFDRIAGFFDEHL
8	SAM-T99	2hdwA	0.341	0.977	5.002	threading_8	VEHRKVTFANR--YGITLAADLYLPKNR-GGDRLPAIVIGGPFGAVKEQSSGLYAQTMAERGFVTLAFDPSYTGESGGQPRNVASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRVKAVVTSTMYDMTRVMSKGYNDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYN-ELKGGEAQFLVDYHDYYMTPRGYHPRAVNSWTMTTPLSFMNMPILTYIKEISPRPILLIHGERAHSRYFSETAYAAAA-EPKELLIVPGASHVDLYD--RLDRIPFDRIAGFFDEHL
9	MUSTER	2wtnB	0.205	0.797	1.477	threading_9	---GAMYIDC---DGIKLNAYLDMPKN--NPEKCPLCIIIHGFTGHSEEHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDH-TLFKWLTNILAVVDYAKKLDFVTD--IYMAGHSQGGLSVMLAAAMERIIKALIPLSPAAMIPEIARTG---------------------------ELLGLKFDPENIPD-----------------ELDAWDGRKLKGNYVRVAQTIRVEDFVDKY-TKPVLIVHGDQDEPYEASVAFSKQY--KNCKLVTIPGDTH--CYDHH--LELVTEAVKEFMLEQI
10	SPARKS	2wtma	0.201	0.797	2.109	threading_10	----GAMYIDCDG--IKLNAYLDMPKN--NPEKCPLCIIIHGFTGHSERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDH-TLFKWLTNILAVVDYAKKLDFVTD--IYMAGHSQGGLSVMLAAAMERIIKALIPLSPAAM---------------------------IPEIARTGELLGLKFDPEN-----------------IPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKY-TKPVLIVHGDQDEPYEASVAFSKQY--KNCKLVTIPGDTH----CYDHHLELVTEAVKEFMLEQI

Predicted Tertiary Structure


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TM-score=0.725 to 1a88A SCOP code=c.69.1.12	TM-score=0.726 to 1a88A SCOP code=c.69.1.12	TM-score=0.726 to 1a88A SCOP code=c.69.1.12	TM-score=0.728 to 1a88A SCOP code=c.69.1.12	TM-score=0.724 to 1a88A SCOP code=c.69.1.12