Template-based Modeling Results for YCJO_ECOLI

Submitted Primary Sequence

>Length 293
MNRLFSGRSDMPFALLLLAPSLLLLGGLVAWPMVSNIEISFLRLPLNPNIESTFVGVSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNREFRLRKTARSLVILSYVTPSISLVFAWKYMFNNGYGIVNYLGVDLLHLYEQAPLWFDNPGSSFVLVVLFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTTKVDILGVYLYKTAFAFNDLGKAAAISVVLFIIIFAVILLTRKRVNLNGNK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNRLFSGRSDMPFALLLLAPSLLLLGGLVAWPMVSNIEISFLRLPLNPNIESTFVGVSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNREFRLRKTARSLVILSYVTPSISLVFAWKYMFNNGYGIVNYLGVDLLHLYEQAPLWFDNPGSSFVLVVLFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTTKVDILGVYLYKTAFAFNDLGKAAAISVVLFIIIFAVILLTRKRVNLNGNK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNRLFSGRSDMPFALLLLAPSLLLLGGLVAWPMVSNIEISFLRLPLNPNIESTFVGVSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNREFRLRKTARSLVILSYVTPSISLVFAWKYMFNNGYGIVNYLGVDLLHLYEQAPLWFDNPGSSFVLVVLFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTTKVDILGVYLYKTAFAFNDLGKAAAISVVLFIIIFAVILLTRKRVNLNGNK
54321202110000000000000000001000000100000020201221302000010002001021002000100010000000000000000000233131230000000000000000000001000111100001000101201331011031100000000000002000000000000022013100100401202001101100010010000000001001001000000100221100000001100221110000000000000000000002221323234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNRLFSGRSDMPFALLLLAPSLLLLGGLVAWPMVSNIEISFLRLPLNPNIESTFVGVSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNREFRLRKTARSLVILSYVTPSISLVFAWKYMFNNGYGIVNYLGVDLLHLYEQAPLWFDNPGSSFVLVVLFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTTKVDILGVYLYKTAFAFNDLGKAAAISVVLFIIIFAVILLTRKRVNLNGNK
1	MUSTER	2r6gF	0.260	0.945	2.357	threading_1	NLRVITQNRQALSDITAILPNKVMM-LYTLIGFYQSITANWGDEKLSPGY-TVTTGWKNFTRVFTDEPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALF---GVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTGYTDLLVNYTYRIAFEGQDFGLAAAIATLIFLLVGALAIV-----------
2	SPARKS	3fh6f	0.263	0.986	8.306	threading_2	LFAITTLILSSAGLYIYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQLTAQEVLLKNFTRVFTDEPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSAL---FGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNYTDLLVNYTYRIAFEGQDFGLAAAIATLIFLLVGALAIVNLKATRMKFD-
3	PROSPECT2	2r6gF	0.269	0.952	2.929	threading_3	DALKWSAQGEYLFAITTLILSSAGLYIFKYRPNNQIGFYQSITANWGSPGYTVTTGWKNFTRVFTDEGFLAIFVWTVVFSLITVFLTVAVGMVLACLVQEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSA---LFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNYTDLLVNYTYRIAFEGGDFGLAAAIATLIFLLVGALAIV-----------
4	PPA-I	2r6gF3	0.289	0.662	7.901	threading_4	-----------------------------------------------------------------DEPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALF---GVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNYTDLLVNYTYRIAFEGGGG-------------------------------
5	HHPRED-l	2onk_C	0.163	0.857	6.707	threading_5	--------MRLLFSALLALLSSI-ILLFVLLPVAATVTLQ-------------LFNFDEFLKAASDPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSS-GLIGSFS------PL-------KFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYYPMIAPTLIYER-YLSEGLSAAMPVAAILILLSLAVFVA-LRIIVG----
6	HHPRED-g	2onk_C	0.163	0.857	6.086	threading_6	--------MRLLFSALLALLSSI-ILLFVLLPVAATVTLQ-------------LFNFDEFLKAASDPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSS-GLIGSFS---P---LK-------FVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYYPMIAPTLIYER-YLSEGLSAAMPVAAILILLSLAVFVAL-RIIVG----
7	SP3	3puvf	0.266	0.949	6.835	threading_7	NLRVITQNRQALSDITAILPSLRQFSGTQYRPNNQIGFYQSINWGDEKPGYTVTTGWKNFTRVFTDEGFLAIFVWTVVFSLITVFLTVAVGMVLACLVQEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMML---SALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTGYTDLLVNYTYRIAFEGQDFGLAAAIATLIFLLVGALAI------------
8	SAM-T99	2r6gF	0.276	0.840	7.159	threading_8	--------------------------------FYQSITANWGDEKLSPG-YTVTTGWKNFTRVFTDEPFLAIFVWTVVFSLITVFLTVAVGMVLACLVWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFG---VKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGYTYRIAFGGQDFGLAAAIATLIFLLVGALAIV-----------
9	MUSTER	2r6gF3	0.295	0.659	2.098	threading_9	-----------------------------------------------------------------DEPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALF---GVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTGYTDLLVNYTYRIAFEGG--G------------------------------
10	SPARKS	3puyf	0.275	0.881	8.099	threading_10	LTNNQSGV--------------------KYRPNNQIGFYQSINWGKLSPGYTVTTGWKNFTRVFTDEGFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSA---LFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNYTDLLVNYTYRIAFEGGDFGLAAAIATLIFLLVGALAI------------

Predicted Tertiary Structure


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TM-score=0.778 to 2r6gF SCOP code=e.70.1.1	TM-score=0.769 to 2r6gF SCOP code=e.70.1.1	TM-score=0.754 to 2r6gF SCOP code=e.70.1.1	TM-score=0.769 to 2r6gF SCOP code=e.70.1.1	TM-score=0.770 to 2r6gF SCOP code=e.70.1.1