Template-based Modeling Results for YCIT_ECOLI

Submitted Primary Sequence

>Length 249
MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEAIVLTDSSKFGAVHSYSIGPVERFNRVITDSKIRASDLMHLEHSKLTIHVVDI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEAIVLTDSSKFGAVHSYSIGPVERFNRVITDSKIRASDLMHLEHSKLTIHVVDI
CCHHHHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCEEEEECCEEECCCCCEEHHHHHHHHHCCCCCEEEEECCEECCCCCCCCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCEEEEEEECHHHCCEEEECCCCCHHHHHHHHHCCCEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEAIVLTDSSKFGAVHSYSIGPVERFNRVITDSKIRASDLMHLEHSKLTIHVVDI
543103201210352220202200520211221022003102522102101110001323313222211131131002000310431100001100000100210233331000000002001103323010000101023322000020022003202001000001001132101122121010020002312000000221312120000001033021000123032210210351421010022
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRAHGFAVSLDSDDVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLARTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHFSKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEAIVLTDSSKFGAVHSYSIGPVERFNRVITDSKIRASDLMHLEHSKLTIHVVDI
1	MUSTER	2w48B	0.139	0.956	0.834	threading_1	NSDDIRLIVKIAQL-QDMTQAQIARELGIYRTTISRLLKRGREQGILKQKFG-AVVASSDG-LLEEEQLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPSQSRQVICVPHVNTLTYGAAAR------LKAESHLDNPLIR-QHFKTISSYWSLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARVAGDIRFYDITNMSEKTLIEMAKLRQARYSIG-EEKYSGILGALHGRYINCLVTNR
2	SPARKS	2w48a	0.159	0.908	1.214	threading_2	DIRLIVKIAQLYYEQD-MTQAQIARELGIYRTTISRLLKRGREQGIVT-----IAINYDYNLEQQLKQKFEQLSAMGQHGALLVEPGDIIGFSWGRAVRSLVENLRSQSRQVICVPHVNTLTYGAAADSLDVALVGGSPAIRDGAFYGSEESDDLNARHV-AGDICSRFYDINGGLVDTNMSELSIEMAKLRQARYSIGIAGEEK--YSGILGALHGRYINCLVTN----RETAELLLK----------
3	PROSPECT2	2w48A	0.110	0.948	1.668	threading_3	SDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINY-----DYNENLWLEQQLKQKQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRSQQVICVPHVNTLTYGAAAR------LKAESHLADFPALSQHFKTISSYWDLDVALVGIGSPAIRDGANWHAFYGSEESDDLNA--RHVAGDIGLVDTNMSEKTLSIEMAKARYSIMGEEKYSGILGALHGRYINCLVTNR
4	PPA-I	3enwA	0.122	0.627	1.509	threading_4	-------------------------------------------------------------------TQDEMKKAAGWAALKYVEKGSIVGVGTGSTVNHFIDALGTMSEEIGAVSSSVASTEKLEALGIKIF------DCNEVA-------------SLDIYVDGADEINADREMIKGGGAALTREKIVAAIADKFICIVDGTKAVDV-------LGTFPLPVEVIPMASYVARQLVKLGGDPCYREG
5	HHPRED-l	3rrl_B	0.134	0.659	3.377	threading_5	------------------------------------------------------------------------REAIIKRAAKELKEG-YVNLGIGLPT-LVANEVSG---NIVFQSENGLLGYPLGSVDADLINAGKEVVPGASFFNSADSFA-IRGGHIDLAILGG-EVSQNGDLANW-IPKKLIK-DLVHGAKKVIVI-EHCNKGESKVKKECSLGVVHQLITDLAVFLDQ--VKEKTEAEFEVRL-
6	HHPRED-g	3rrl_B	0.122	0.659	3.254	threading_6	------------------------------------------------------------------------REAIIKRAAKELKEG-YVNLGIGLPT-LVANEVS-G--NIVFQSENGLLGYPLEGVDADLINAGKEVVPGASFFNSADSFA-IRGGHIDLAILGG-EVSQNGDLANW-IPKKLIK-DLVHGAKKVIVI-EHCNKGESKVKKECSLGVVHQLITDLAVSLDQVKEKTEAEFEVRL---
7	SP3	1ks2a1	0.170	0.542	1.248	threading_7	-------------------------------------------------------------------TQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTKGQIEGAVSSSDASTEKLKSLGIHVF--------------------DLNEVSLGIYVDGADEINGH--QIKGGGAALTREKIIASVAEKFICIADASKQ-------------VDIL-ANRGAD-----------VALIGTPD
8	SAM-T99	3ixqA	0.216	0.594	1.451	threading_8	--------------------------------------------------------------------NEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNR----------------IREEELTVFGIPTSFEAKMLAMQYEIPLVTLDEYDVDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYANEFVVLVDESKLVKKLGEKFPIPVEV--------IPSAYRVVIRAL---------
9	MUSTER	1vb5B	0.206	0.839	0.747	threading_9	LPERVLEILREMKR--RIKFLTLAEELDESEDAIMELREEVVK-NLARF-----IPVTNRRALEFLRRMEEAKRELASIGAQLIDDGDVIITSFSSTVLEIIRTAKERKKRFKVIL-GLHLARELEFSGIEFEVI--------DAQMGLFCRE------ASIAIVGADMITKDGYVVNKA--TYLLALACHENAIPFYVAAETYKFHPNVLFDVTPWKYVRGIITELIPPRDIQ---------------
10	SPARKS	1lk5a	0.175	0.618	1.210	threading_10	------------------------------------------------------------------MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKDIVGVPTSYQAKLLAIEHDIPIA--------------------SLDQVAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLCQKMPVPIEVIPQAW---------KAIIEELSIFNAKAELRMG

Predicted Tertiary Structure


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TM-score=0.692 to 2gnpA SCOP code=c.124.1.8	TM-score=0.825 to 1vb5B SCOP code=c.124.1.5	TM-score=0.611 to 2gnpA SCOP code=c.124.1.8	TM-score=0.618 to 2gnpA SCOP code=c.124.1.8	TM-score=0.610 to 1m0sA SCOP code=c.124.1.4