Template-based Modeling Results for YCIM_ECOLI

Submitted Primary Sequence

>Length 389
MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKAIDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRVISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKAIDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRVISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKAIDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRVISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL
23100000000000001010121012224321330210010000012232132003001200421121030010001002222103200400220041122223210100110020022122132003002200421322120011002002212203200300220051133433120020001002011323213200200230031133003000100200222220220030023003213310020011012002312212200300230043211120010001002223113100300120033212130012001000222222303200210230012114222201022011201100110010311120412411424
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKAIDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRVISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL
1	MUSTER	1w3bA	0.164	0.907	2.533	threading_1	NTGVLLLLSSIHFQCRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL----YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-----LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ--QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM------------------------
2	SPARKS	1w3ba	0.164	0.910	4.382	threading_2	NTGVLLLLSSIHFQCRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN----PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-----LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ--QQGKLQEALMHYKEAIRISPTFADAYNMGNTLKEMQD-----------------------
3	PROSPECT2	1w3bA	0.163	0.913	3.270	threading_3	NTGVLLLLSSIHFQCRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC----VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-----LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK------LQEALMHYKEAIRISPTF--ADAYSNMGNTLKE----------------MQD
4	PPA-I	1w3bA	0.161	0.913	3.312	threading_4	NTGVLLLLSSIHFQCRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN----PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-----LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHDSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ--QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD----------------------
5	HHPRED-l	3ieg_A	0.119	0.823	1.739	threading_5	--------------------------------ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA-GKSKAALPDLTKVIALK-D----FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEAESQLVKAAFDGADYTAAITFLDKILEVCVWDAE-----LRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK-RCFIESAEELIRDGRYTDATSKYESV-KTEPSVRSKERICHCFSKDEKPVEAIRICSEVLQ-EPDNNALKDRAEAY---LIEE-YDEAIQDYEAAQEHNENDQQIREGLEAQRLLKQ-SQK-------------R-----
6	HHPRED-g	1w3b_A	0.179	0.918	1.792	threading_6	--GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-----LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL--QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD----------------------
7	SP3	2y4ta	0.134	0.961	3.868	threading_7	MVEKHLELGKKLLAAGLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN-----TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNGRYTDATSKYESVMKTEPEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLRNAKKQEIIKAYRKLALQHPDNFQNEEEKK---KAEKKFIDIAA--AKEVLSPMR-----
8	SAM-T99	1w3bA	0.170	0.864	4.219	threading_8	---VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC----VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-----LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHASLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL------QEALMHYKEAIRISPTF----------------------------------
9	MUSTER	3cvnA	0.113	0.751	2.061	threading_9	---------------------TDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP----KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLFFFAAPNEYRECRTLLHAALEMNPND-----AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY-VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGRSMWDFFRMLLNVMNRPDLVELTYAQNVEP---FAKEFGLQSMLL---------------------------------------------------------------
10	SPARKS	2xpia	0.123	0.902	4.260	threading_10	SSACRYLAAFCLVKLYWQGALNLLGETNPFRMQDASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCSDLLLCKADTLFVRSRFIDVLAITTKILEID----PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF-----GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD-PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH--KKIPGLAITHLHESLAISPNEIMASDLLKRALE--------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.856 to 1w3bA SCOP code=a.118.8.1	TM-score=0.876 to 1w3bA SCOP code=a.118.8.1	TM-score=0.837 to 1w3bA SCOP code=a.118.8.1	TM-score=0.782 to 1w3bA SCOP code=a.118.8.1	TM-score=0.812 to 1w3bA SCOP code=a.118.8.1