Template-based Modeling Results for YCIK_ECOLI


  Submitted Primary Sequence

>Length 252
MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGISQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGISQ
CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCHHHCCCCCCEEEECCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGISQ
553314332232100000000200020001000421020000011331022002102522133020000002212231023002200320130000000000112101023132300220020002001100000011115242000000000002201121000000100010001000220232010000000003021001013223132122011001000000012122210100001211322234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGISQ
1MUSTER1fmcA0.2410.9722.225threading_1MFNSDNLR-LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQ---AFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPF--DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGKNIRVNGIAPGAILTDALKSVITHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGGVQELN-
2SPARKS3pk0a0.3020.9721.978threading_2----GSMFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGK--VIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLAT-MTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGITGYPGWSHYGATKAAQLGFMRTAAIELAHKITVNAIMPGNIMTEYIASMARSIPAGALGTPEDIGHLAAFLATKEAGYITGQAIAVDGGQVLAIAT
3PROSPECT21iy8a0.2280.9563.357threading_3--------RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAE-VLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRGIRINAIAPGAIWTPMVENSMQVNPSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQSAA--Y
4PPA-I1fmcA0.2410.9721.777threading_4MFNSDNLR-LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQ---AFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPF--DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGKNIRVNGIAPGAILTDALKSVITHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGGVQELN-
5HHPRED-l1yxm_A0.1950.9761.459threading_5--YLA-PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPQARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQ-FLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIV-PTKAGFPLAVHSGAARAGVYNLTKSLALEWACGIRINCVAPGVIYSQTAVENYQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSLYTP-
6HHPRED-g3ak4_A0.2620.9401.294threading_6-----GIFDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGG------FAVEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMR-PAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAPNIRVNCVCPGFVKTAMQERYVSLTPLGRIEEPEDVADVVVFLASDAARFMTGQGINVTGGVRMD---
7SP33pk0a0.2940.9722.020threading_7----GSMFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGK--VIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLAT-MTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGITGYPGWSHYGATKAAQLGFMRTAAIELAHKITVNAIMPGNIMTEGLEEYIASIPAGALGTPEDIGHLAAFLATKEAGYITGQAIAVDGGQVLAIAT
8SAM-T992uvdA0.2540.9371.348threading_8--------MLKGKVALVTGASRGIGRAIAIDLAKQGANVVVNAGNEQKANEVVDEIKKLGSD---AIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGV-TKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASNITVNAIAPGFIATDMKAEMLKLIPAAQFGEAQDIANAVTFFASDQSKYITGQTLNVDGGMVM----
9MUSTER1nfqA0.2300.9482.210threading_9------SGRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD------AARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIED-YALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPGIRVNSIHPGLVKTPMTDWVPEQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAH
10SPARKS3nuga0.2500.9371.970threading_10------TERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI------GKKARAIAADISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDD-VDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATELGYNITANAVTPGLIESDGVKASPHLQAMKGKGQPEHIADVVSFLASDDARWITGQTLNVDAGMVRH---

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.958 to 1fmcA
TM-score=0.876 to native
SCOP code=c.2.1.2
TM-score=0.954 to 2c07A
TM-score=0.869 to native
SCOP code=c.2.1.2
TM-score=0.907 to 1vl8B
TM-score=0.855 to native
SCOP code=c.2.1.2
TM-score=0.935 to 1iy8A
TM-score=0.896 to native
SCOP code=c.2.1.2
TM-score=0.958 to 1fmcA
TM-score=0.876 to native
SCOP code=c.2.1.2

  Experimental Structure

Download 3f1lA
SCOP code=c.2.1.2