Template-based Modeling Results for YCIC_ECOLI

Submitted Primary Sequence

>Length 247
MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPSDAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVILIIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLVVVPGIIMAILLALAPVMLVQDKMGVFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEIGAVLANTLSNLISAILLIYLFRLYMLIRQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPSDAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVILIIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLVVVPGIIMAILLALAPVMLVQDKMGVFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEIGAVLANTLSNLISAILLIYLFRLYMLIRQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPSDAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVILIIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLVVVPGIIMAILLALAPVMLVQDKMGVFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEIGAVLANTLSNLISAILLIYLFRLYMLIRQ
5512031002100100120000000000000000000010111231101102201311220001100220123112100100001000000010000000000021012223120020000002101300110110000121022321120011111211121112243210010010001000100210010000110010001000100100132001000100000000000000010011135
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPSDAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVILIIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLVVVPGIIMAILLALAPVMLVQDKMGVFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEIGAVLANTLSNLISAILLIYLFRLYMLIRQ
1	PROSPECT2	2bkuB2	0.107	0.988	1.441	threading_1	-TDTVAETSASISTFVMDKLGQTMLQSNILTVLAAVIRKSVEPVADMLRLLEKKDSAFIEDDVFYAISALAASLGKGFEKY--LETFSPYLLKALVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFWVIDYIKQKRQLSL
2	PPA-I	3klyC	0.130	0.968	1.178	threading_2	--TGEGKAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPYGVTKLLG---GLAFSLGLILVVITVAKASGKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHKLFLQAFALGLMCNILVCLAVWMTSARSLTDKVMVLILPVAMFV-SSGFEHCIANMFQVPMAIGIKYFAPESFWAMTGANIAQYA-DLNFVNFIVNNLIPVTLGNIVGGGVFVGMWYWLIYLK-
3	PROSPECT2	3ibvA1	0.078	0.935	1.298	threading_3	MPSVGPIIKQQATDFIGKICHEITRLICLQTLSEKVREWNNESNLLELQMIRDS--------VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN------INLIVNEPCMNLLYSFLQ--IEELRCAACETMTEIVNKLNLLNILNLNLFFSK
4	PPA-I	3zuxA	0.096	0.927	1.121	threading_4	LKPSDDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLN---LPAEIAVGVILVRGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGGS---KTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYL-----LGFFAAKWTGLPYDAQKALTIEVGNSGLAAALAAAHFAAAPVVA--VPGALFSVWHNISGSLLATYWAAKA-----
5	PROSPECT2	1ee4a	0.093	1.000	1.265	threading_5	QELPQMQEQLSATVKFRQILDVVIQAGVVPRLVEWALTNIASGTSAQTKVVVDADYVLQCNAMEPILGLFNSNKPSLIRTADACWAISYLAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIDLQTQVVINAGVLPALRLLLSSPKENIKKEACWNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLIKPLCDLLEIADNRIIEVTLDALENILKMGEADKMEKIFNCQQN
6	PPA-I	3g61A1	0.108	0.976	1.121	threading_6	--VSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIF---GDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRRQKFFHAIMIGWFDVGELNTRLTDDVSKINEGIGD-KIGMFFQAMATFFGGFIIGFTRIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIQLTLLLLAIVPIIAIAGVVEMKMLSGQALK
7	PROSPECT2	3l6aA	0.106	0.996	1.262	threading_7	HH-SKEELLKLTETVVTKHFLPEMLSKVIILISLLKQEGIATPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQDREWLTELFQQSMQKMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNAPSKEQLEQEKQLLLFKPVMQKFLHDHVDLQVSALYALQVHCYNMLLRFFVHFYAFLAA
8	PPA-I	3i9wA	0.137	0.915	1.072	threading_8	-----------------PTMNMARQLSEASAWELFAAQNLTSADNEKMWQAQGRMLTAQSLKINALLQALREQGDTTAIEQQEQEISRSLRQQGELVGQRLQLRQQQQQ--LSQQIVAAADEIARLAQGQANNATTSAGATQAGIYLIEQDQRQAAESAL--DRLIDIDLEYVNQMNELRLSALRVQQMVMAPTLEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTTVSQYSDLLALYQQDSEISN
9	PROSPECT2	1oyzA	0.115	0.951	1.255	threading_9	KASKEYGLYNQCDDELFRSLKRISSARVLQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKVFNILNNALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIATIPLLINLL------------KDPNGDVRNWAAFAININKYDNSDIRDCFVELQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELNTVYDDIIEAAGELGDKTLLPVLDIITSAIDKLKRS
10	PPA-I	1b3uA3	0.140	0.721	1.059	threading_10	-------------------GIRQLSQSLLPAIVELAED---AKWRVRLAIIEYMPLLAGQLGLNSLCMAWDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTVDVKYFAQEALTVLLA-----------------------------------------------

Predicted Tertiary Structure


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TM-score=0.715 to 3ea5B SCOP code=a.118.1.1	TM-score=0.635 to 2abmA SCOP code=f.19.1.1	TM-score=0.632 to 1wa5C SCOP code=a.118.1.1	TM-score=0.446 to 1u6gC SCOP code=a.118.1.2	TM-score=0.635 to 1wa5B SCOP code=a.118.1.1