Template-based Modeling Results for YCIB_ECOLI

Submitted Primary Sequence

>Length 179
MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRFRKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQRMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLIFTLLSGIYIYRHMPQEDKS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRFRKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQRMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLIFTLLSGIYIYRHMPQEDKS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRFRKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQRMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLIFTLLSGIYIYRHMPQEDKS
43201200000000000100100000000000000000001022320221000000000000000000223200100000000000000000110132100110123212013100010010000000000000100011012100010200000000000000001001321234444
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRFRKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQRMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLIFTLLSGIYIYRHMPQEDKS
1	SPARKS	2x1gf	0.061	0.911	1.365	threading_1	AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEG-CVTITAVLLEVVHKCYWPCIHGCMTADENELAESCLKTMVNIIIQPDCHNY---------------PKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPE
2	PROSPECT2	1pw4A2	0.120	0.978	1.178	threading_2	NKLLWYIA-IANVFVYLLRYGILAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPV---MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIHEQLLQELVP
3	PPA-I	3rceA1	0.192	0.698	1.470	threading_3	---LVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWY-----PSSYSLNFAMIGLFGLYTLVFHRKE--------KIFYLAIALMIIALSMLA--------------------------WQYKLALIVLLFAIFAFKEEKINFYMIWALIFISISILHLSGG------------
4	SPARKS	2xwub	0.085	0.989	1.167	threading_4	IPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQ--VEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQLVDVLLHKAQFPSDEEYSDEKEQFRIYRVDISDTLMYVYEMLGAELYDKLGRLLYSWQHTEALLYGFQSIAETIDVNYSD
5	PROSPECT2	1oyzA	0.089	1.000	1.081	threading_5	DDELFRLLSLKRISSARVLQLRGGQDAVYIRRDIGAFILGQIKICKKCEDNVFNILNTAIESTAQRCKKNPIYSPKIVEQSQITTNVRRATAFAISVIATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVELQDKNEEVRIEAIIGLSDDIIEAAGELPVLDTLYKFDDNS
6	PPA-I	1pw4A2	0.103	0.978	1.295	threading_6	RYGILDWSPTYLKLDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN--RGATGVFFMTLVTIATIVYWMNPA--GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQEL
7	SPARKS	2bkub	0.090	0.933	1.127	threading_7	VSSSNNILIAIVQGA---QSTETSKAVRLAALNALADSLIFIK-NNMEREGERNYLMQVVCEAT----QAEDI-EVQAAAFGCLCKIMSKYYTFMKPEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL---TRQNEDPED
8	PROSPECT2	1t33A	0.091	0.860	1.069	threading_8	MNQLIAAA-LAQFGAITYYFGSKEDLYLACAQWIADFLAERLFSQPAPDRDAIRELILLACKNMIMLLTQE----------DTVNLSKFISREQLSPTSAYQLVH-------EQVIDPLHTHLTRLVAA-------YTGCDANDTRMILHTHALLGEVLAFRLGKETILLRTGWPQFDQ
9	PPA-I	3kz9C	0.100	0.950	1.234	threading_9	LSPLKRKQQLEIALEVFARRGIGRGGHADIAEIAVSVATVFNYFP--TREDLVDEVLNHVVRQFSNFLSDNI--DLDLHAKENIANITNAIELVVQDNHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNFIKAIERGEVCDQHN-----PEDLANLFHGICYSLFVQANRTNNTAE
10	SPARKS	3m1ic	0.118	0.950	1.118	threading_10	QEILTKFQPDAWQKADQILQFSTNPQSKFIALSILDKLITR-KWKLLP-NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQEFIPELIGSS----SSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQ---GSSSSL

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.895 to 1pw4A SCOP code=f.38.1.1	TM-score=0.684 to 1wa5C SCOP code=a.118.1.1	TM-score=0.840 to 1pw4A SCOP code=f.38.1.1	TM-score=0.510 to 1vb5B SCOP code=c.124.1.5	TM-score=0.589 to 1xm9A SCOP code=a.118.1.24