Template-based Modeling Results for YCHO_ECOLI

Submitted Primary Sequence

>Length 464
MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDNGLVSNVGVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLSANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFYQHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGAQANSAEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDNGLVSNVGVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLSANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFYQHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGAQANSAEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP
CCCEEEEEEEHHHHHHHHHHECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEEEHHHEECCCEEEEHHCCEEECCCCEEEEEEEEEEEECCCEEEEEEEEEECCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCHHHHCCCCCCEEEEEEECCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCHHHHCCCCHHHHCCCCHHHCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCHHHHHHCCCEEECCCCEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEEECCEEEECCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDNGLVSNVGVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLSANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFYQHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGAQANSAEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP
55310121010000000000002132213332222133223212311223333311220020022002112223222212102110112023101310231023103210101010101331412112000012012232100002100212231100000000000121000000000002133412100000100021010000000101223322211222113110000201011121010100011000020101332222312200100010000110101011221333343110001000101220332112121231221221112313223211111212210101012222323312101020202142101101020202001112111122221010001313214322110100000212412212222020101211112232325355
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDNGLVSNVGVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLSANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFYQHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGAQANSAEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP
1	MUSTER	3cu7A	0.117	0.998	0.891	threading_1	YPDKKFSYSSGHVHLSSENKFQNSAILTIQPKQLPGGQNPVSYVYLEVVSKHFSKSKRMPITYDNVRVYSLNDDLKPAKRETVLTFIDPEGSEVDMVEEIDHIGIIPRYGMWTIKAKYKEDFSTTGTAYFEVKEYVLPHFSVSIEEYNFIGYKNFKNFEITIKARYFYNKVVTEADVYITFDLKDDQKEMMQTAMQNTMLINGIAQVTFDSETAVKELSYYSLEDLNNKYLYIAVTVGGFSEEAEIPGIKYVLSPKLNLVATPLKPGIPYPIKVQVKDQLVGGVPVTLNAQTIDVNQETSDLDPSKSVTDGVSFVLNLPSGVTVLEFNVKTDAPDLPEENQARAIAYLSQSYLYIDWTDNHKALLVGEHLNIIVTPKSPYIHYNYLILSKGKIIHFGTREKFSDASYQSINIPV-TQNMVPSSRLLVYYIVTGEQTAELVSDSVWLNIEEKQVHLSPDADAYSP
2	SPARKS	3gdba	0.111	0.953	0.933	threading_2	LDSMVFWEGLVTPDVIDAGHRNGVPVYFFNWSNSIADQERFAEALKQDADGSFPIARKLVDMAKYYGTGDLVKPLGEKMRQFMLYSKEYAAKVNHPGLGEYNYQFMQPEGDKVPADNFFANFNWDKAKNDYTIATANNPYDVFAGQGGILDENGKLRLSLGLDTITSLGKFFTGYQGDPTGQKPGDKDWYGI-ANLVADRTPAVGNTFTTGHGKKWFVDGKVSKDSEWNYRSVSGVLPTWRWWQTRAEYDAYNGGNSLKFSGDVAGKTDQDVRLYSTKLEVTKTKLRVAHKGGKGS--------KVYMAFSTTPDYKFDDADAWKELTLSDNEFDLSSLAGKTILFFEAVKDYQFNLGQLTISDNHQESVVKQSLKNAQEAEAVVQFKGNKDADFY--EVYEKDGDSWKLLTGSSRSASAQGTTQELKVVAVGKNGVRSEAATTTFDWGMTVK-----------
3	PROSPECT2	2qdzA	0.069	0.879	1.951	threading_3	LLPGARDLNRIDDRQRKEQLQRDIERAATSGHTGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATDGKPLEGTRDRMMVFSAVFDIDQAIYNINNGGKTGNITIVPADEYG----YSYLDLQLQRRALPRVSLGMDNSGPGTPENGRYKYNASVTLNDTLGLYIGNRYYRDAGHDAERNYDLMYTRLDLQTGYSTYRNLLKTRYGQYQSAGN-SRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLDVSSSDVTVGMQYSTQRGYFGDLSFTRGVGVGNVSRFNGSLAWTQQLLNSYQITVGDEYTVRGYNLRTSQSGDSGVYLSNTLTVPVQFSLLGKQASVNHPDARTIRMAVRFDLPYARMSFTY--------------------SKPVGAQPGGAPRAPVWLYINAGLS-------------------------------F
4	PPA-I	2qdzA	0.079	0.927	1.263	threading_4	LNRIDDRQRKEQLQRDIERAATSGHTVTVHGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYDGKPLEGTRDRMMVFSAMPGWQVFDIDQAIYNINNGGKTGNITIVPADEYGYSYLDLQLQRRALPRVSLGMDNSGPGTPENGRYKYNASVTANDLLGNDTLGLYIGNRYYRDAGHDAERNYDLMYSVDLQTGYSTYRNLLKTRYGQYQSAGN-SRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLDVSSKDVTVGMQYSTQRGYFGDLSFTRGVGVGNVSRFNGSLAWTRQLLNSYQITVGDEYTVRGYNLRTSQSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVG-ADVGALKSNHPDARTIRMAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLSF--------------------------------
5	HHPRED-l	3pe9_A	0.067	0.192	1.160	threading_5	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVKLTAPKSNVVAYGNEFLKITATASDDGKISRVDFLVDGEV------IGSDREAPYEYEWKA---V---EGNHEISVIAYDDDDAASTPDSVKIFVKQAR------------
6	HHPRED-g	3pe9_A	0.067	0.192	1.338	threading_6	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVKLTAPKSNVVAYGNEFLKITATASDSGKISRVDFLVDGEVI------GSDREAPYEYEWK---AV---EGNHEISVIAYDDDDAASTPDSVKIFVKQAR------------
7	SP3	1nqea	0.078	0.963	0.505	threading_7	ANRFEQPRSTVLAPTTVVTR-----QDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSASHVLVLGVRLNLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIGTEISAGWGSNSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGGFLSKTLYGALEHNFFVRGYGYDNRTNDTRKLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTTTPGTGYVEDGYDQRNTGIYLTGLQQVGDFFEGAARSDDNSQFGRHGTWQTSAGWEFIEGY--RFIASYGTSYKAPNLGQLYGFYGNPNLDPEKSKQWEGAFEGLTAGV------NWRISGYRNDVSDL--IDYDDHTLKYYNEGKARIKDTGPLTHTVAITDTPLLRRAKQQVKYQLDWQLYDFD--WGITYQYLGTRYDKDYSSYPYQT
8	SAM-T99	1xqrA1	0.167	0.220	0.634	threading_8	---------------------------------------------------------------------------------------------------------LSQPPPTAGEAEQAADQQEREGALELLADLCENDNAADFCQLSGHLLVGRYLEAGAAGLRWRA------------------------------------------------------------------AQLIGTCSQNVAAIQEQV-------------------------------LGLGALRK----------------------LLRLLDRDACDTV------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	3fcsA	0.110	0.957	0.865	threading_9	FSSVVTQAGELVLGAPGGLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVE---------ILDSYYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLLVGPLYMESRADRKLAEVGRVYLFLQPYGRFGSAIAPLGDLDRGYNDIAVAAPYGGPSGRGQVLVFLGQSERSRPSSPFPTGSAFGFSLRGAVDIDGYP----DLIVGAYGANQVAVYRAQ------PVVKASVQLLVQDSLNPAVSCVLPQTKTPVSCFNIQMCVGAGHNIPQKLSLNQLDRQKPRQGRRVLLLGSQQALDLGGKHSPTTMAFLRDEADFRDKLSPIVLSLNVSLPPMAPAVVLHGDTHVQEQGEDDVCVPQLQLTASVTGSPLLVGADNVLELQMDAANE-GEGAYEAELAVHAHYMRALSNVEFERLIC
10	SPARKS	2w91a	0.111	0.955	0.908	threading_10	LDSMVFWEGLVTPDVIDAGHRNGVPVYFFNWSNSIADQERFAEALKQDADGSFPIARKLVDMAKYYGTGDLVKPLGEKMRQFMLYSKEYAAKVNHPGLGEYNYQFMQPEGDKVPADNFFANFNWDKAKNDYTIATANNPYDVFAGQGGILDENGKLRLSLGLDTITSLGKFFTGYQGDPTGQKPGDKDWYGI-ANLVADRTPAVGNTFTTGHGKKWFVDGKVSKDSEWNYRSVSGVLPTWRWWQTRAEYDAYNGGNSLKFSGDVAGKTDQDVRLYSTKLEVTKTKLRVAHKGGKGS--------KVYMAFSTTPDYKFDDADAWKELTLSDNEFDLSSLAGKTILFFEAVKDYQFNLGQLTISDNHQESVVKQSLKNAQEAEAVVQFKGNKDADFY--EVYEKDGDSWKLLTGSSRSASAQGTTQELKVVAVGKNGVRSEAATTTFD---WGMTVKD-------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.465 to 1cwvA SCOP code=b.1.14.1	TM-score=0.536 to 1phoA SCOP code=f.4.3.1	TM-score=0.436 to 1gmmA SCOP code=b.18.1.10	TM-score=0.434 to 1phoA SCOP code=f.4.3.1	TM-score=0.502 to 1hxuA SCOP code=f.4.3.1