Template-based Modeling Results for YCHM_ECOLI

Submitted Primary Sequence

>Length 559
MNKIFSSHVMPFRALIDACWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIGSGVAPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGLAGLLVATLLSGIFLILMGLARFGRLIEYIPVSVTLGFTSGIGITIGTMQIKDFLGLQMAHVPEHYLQKVGALFMALPTINVGDAAIGIVTLGILVFWPRLGIRLPGHLPALLAGCAVMGIVNLLGGHVATIGSQFHYVLADGSQGNGIPQLLPQLVLPWDLPNSEFTLTWDSIRTLLPAAFSMAMLGAIESLLCAVVLDGMTGTKHKANSELVGQGLGNIIAPFFGGITATAAIARSAANVRAGATSPISAVIHSILVILALLVLAPLLSWLPLSAMAALLLMVAWNMSEAHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIARMTRLAPVVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMADL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNKIFSSHVMPFRALIDACWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIGSGVAPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGLAGLLVATLLSGIFLILMGLARFGRLIEYIPVSVTLGFTSGIGITIGTMQIKDFLGLQMAHVPEHYLQKVGALFMALPTINVGDAAIGIVTLGILVFWPRLGIRLPGHLPALLAGCAVMGIVNLLGGHVATIGSQFHYVLADGSQGNGIPQLLPQLVLPWDLPNSEFTLTWDSIRTLLPAAFSMAMLGAIESLLCAVVLDGMTGTKHKANSELVGQGLGNIIAPFFGGITATAAIARSAANVRAGATSPISAVIHSILVILALLVLAPLLSWLPLSAMAALLLMVAWNMSEAHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIARMTRLAPVVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMADL
CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEECCCEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNKIFSSHVMPFRALIDACWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIGSGVAPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGLAGLLVATLLSGIFLILMGLARFGRLIEYIPVSVTLGFTSGIGITIGTMQIKDFLGLQMAHVPEHYLQKVGALFMALPTINVGDAAIGIVTLGILVFWPRLGIRLPGHLPALLAGCAVMGIVNLLGGHVATIGSQFHYVLADGSQGNGIPQLLPQLVLPWDLPNSEFTLTWDSIRTLLPAAFSMAMLGAIESLLCAVVLDGMTGTKHKANSELVGQGLGNIIAPFFGGITATAAIARSAANVRAGATSPISAVIHSILVILALLVLAPLLSWLPLSAMAALLLMVAWNMSEAHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIARMTRLAPVVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMADL
5542101101001000001013312012002000000000000001000001002011100000000000000000003101100100000000100221011000000000000000000010020021001000100000000000011013002131232232002100000210220110000000000000000220033022310000000000000111001000001211000121232221232013111223122231211120022001100000000001000001001221223232101000100010000000001000000100001312120110000000000000000020011001000000000001200203201200230213100000000000000001000000000000000221122120011112123200001010100000020002102232423200001022010000000200220022033202010020223003102302023211320001113200342
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNKIFSSHVMPFRALIDACWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIGSGVAPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGLAGLLVATLLSGIFLILMGLARFGRLIEYIPVSVTLGFTSGIGITIGTMQIKDFLGLQMAHVPEHYLQKVGALFMALPTINVGDAAIGIVTLGILVFWPRLGIRLPGHLPALLAGCAVMGIVNLLGGHVATIGSQFHYVLADGSQGNGIPQLLPQLVLPWDLPNSEFTLTWDSIRTLLPAAFSMAMLGAIESLLCAVVLDGMTGTKHKANSELVGQGLGNIIAPFFGGITATAAIARSAANVRAGATSPISAVIHSILVILALLVLAPLLSWLPLSAMAALLLMVAWNMSEAHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIARMTRLAPVVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMADL
1	SPARKS	3ny7a	0.975	0.211	2.826	threading_1	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSHMTRLAPVVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMADL
2	PROSPECT2	1qgra	0.075	0.980	2.135	threading_2	MEKNSLTSKDPDIKAQYQQRWLAIDANARREQCVAGIACAEILIPQLVANVTNPNSTEHMDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDTRVRVAALQNLVKIMSLYYQYMEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVEHIKNPDWRYRDAAVMAFTVGRICELLPEAAINDVYLAPLLQCLIEGPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSDRPDGHQNNLRSSAYESLMEIVKYPAVQKTTLVIMERLQQVLQMESHIQSFNDLQSLLCATLQNVLRKVQALQISDVVMASLLRMFSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKVCLAAVGLVGDLCRAQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQ-------VDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENFIDHIAGDEDHTACAAGLIGDLCTAFGKDV-LKLVEARPMIHELLTE---GRRSKTNKAKTLARWATKEL
3	HHPRED-l	3qe7_A	0.149	0.685	5.061	threading_3	-------------R-----AIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPALGSSAFISPVLLLL--PLGYEVALGGFIMCGVLFCLVSFIVTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLPA--E--G-------------QTPDSKTIIISITTLAVTVLGSVLFRGFLAILIGVLVGYALSFAMGIVD--TT--------------PIINAHFALPTLY--------TPRFEWFAI----LTILPAALVVIAEHVGHLVVTANIVKKDLGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVLAAAIQMIPLPVMGGVSL-LLYGVIGASGIRVLIEKVDYQNLILTSVI----LIIGVS--------GA--------KVNI-----------GA----AEKGMALATIGIGLSLIFKLI---------------------------------------------------------------------------
4	PPA-I	3ny7A	0.975	0.211	1.195	threading_4	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSHMTRLAPVVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMADL
5	HHPRED-g	3qe7_A	0.167	0.676	4.345	threading_5	---RA---------IGVSERP------PLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFIKGKIPAYLGSSAFISPVLLLL-PL-GYEVALGGFIMCGVLFCLVSFIVTGWLDVLFPPAAMGAIV----AVIGLELAGVAAGMAGLLPAEG------------QTPDSKTIIISITTLAVTVLGSVLFRGFLAI-----I----PILIGVLGYALSFAMGI--VD---TTPIINAHWALPTLYTPRF--------EWFAI----LTILPAALVVIAEHVGHLVVTANIVKKDLGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVLAAAIQMIPLPVMGGVSL-LLYGVIGASGIRVLIEKVDAQNLILTSVILIGVSGKGMALATIVGIGLSLI--------------------------------------------FKLIS--------------------------------------------------------------------------
6	SP3	3ny7a	0.975	0.211	2.841	threading_6	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSHMTRLAPVVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMADL
7	SAM-T99	3ny7A	0.890	0.211	2.281	threading_7	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSHMTRLAPVVVDVP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------DDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMADL
8	SPARKS	3mgla	0.250	0.208	2.216	threading_8	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NAESYELAQHRSTLPRELAVYALEGPFFFAAAETFER-VGSIQETPQILILRLKWVP-FDITGIQTLEEIQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQNVYPVFEGALSAA
9	PROSPECT2	1jdha	0.116	0.830	2.093	threading_9	NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQTARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ--EGAKMAVRLAGGLQKMVALLNKT------NVKFLAITTDCLQILAYNQESKLII------LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLAIVGMQALGLHLTDPSQRLVQNCLWTLRNLS--------------------------------------DAATKQEGMEGLLGTLVQLLGSDDINVVT--CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILARD----------------------------VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-------------AQDKEAAEAIEAEGATAPLRNEGVATYAAAVLFRM
10	HHPRED-l	3ny7_A	0.974	0.209	3.171	threading_10	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSHMTRLAPVVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMAD-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.708 to 1b3uA SCOP code=a.118.1.2	TM-score=0.508 to 1vc1A SCOP code=c.13.2.1	TM-score=0.639 to 1qgkA SCOP code=a.118.1.1	TM-score=0.424 to 2q6hA SCOP code=f.54.1.1	TM-score=0.508 to 1vc1A SCOP code=c.13.2.1