Template-based Modeling Results for YCGR_ECOLI

Submitted Primary Sequence

>Length 244
MSHYHEQFLKQNPLAVLGVLRDLHKAAIPLRLSWNGGQLISKLLAITPDKLVLDFGSQAEDNIAVLKAQHITITAETQGAKVEFTVEQLQQSEYLQLPAFITVPPPTLWFVQRRRYFRISAPLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKPAELQEGMRFAQIEVNMGQWGVFHFDAQLISISERKVIDGKNETITTPRLSFRFLNVSPTVERQLQRIIFSLEREAREKADKVRD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSHYHEQFLKQNPLAVLGVLRDLHKAAIPLRLSWNGGQLISKLLAITPDKLVLDFGSQAEDNIAVLKAQHITITAETQGAKVEFTVEQLQQSEYLQLPAFITVPPPTLWFVQRRRYFRISAPLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKPAELQEGMRFAQIEVNMGQWGVFHFDAQLISISERKVIDGKNETITTPRLSFRFLNVSPTVERQLQRIIFSLEREAREKADKVRD
CCCCCCCCHHCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEEEECCCCEEEECCCCHHHCHHHCCCCCEEEEEEECCEEEEEEECCCEEEEECCCCEEEECCHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSHYHEQFLKQNPLAVLGVLRDLHKAAIPLRLSWNGGQLISKLLAITPDKLVLDFGSQAEDNIAVLKAQHITITAETQGAKVEFTVEQLQQSEYLQLPAFITVPPPTLWFVQRRRYFRISAPLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKPAELQEGMRFAQIEVNMGQWGVFHFDAQLISISERKVIDGKNETITTPRLSFRFLNVSPTVERQLQRIIFSLEREAREKADKVRD
5543332123311100000022025221201011230100010010143200000002233112013132000001122020101032111021231200101012101002223101020223220002021334220201000002100000022222231331210110102014202020101000002121132433212000000101302321131012001111221333234245
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSHYHEQFLKQNPLAVLGVLRDLHKAAIPLRLSWNGGQLISKLLAITPDKLVLDFGSQAEDNIAVLKAQHITITAETQGAKVEFTVEQLQQSEYLQLPAFITVPPPTLWFVQRRRYFRISAPLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKPAELQEGMRFAQIEVNMGQWGVFHFDAQLISISERKVIDGKNETITTPRLSFRFLNVSPTVERQLQRIIFSLEREAREKADKVRD
1	MUSTER	2gjgA	0.210	0.955	2.473	threading_1	ESDAPQPKVLSTPLEIAANLRQLQESHDPLIITFHDRRFQSYVVHVDRESLALDE-IPRDGEKFIENGEHFRVEGFHDGVRIAWECDHLKISEVDGHRCYSGPLPQEVTYHQRRNAFRAALKLSQLVDIILDGAKGNGARGKLLDISATGCKLRFEGNVEDRLQLGQVYERFKAGNPLGLVDTVELRHLHYEER---------INTTFAGVRFHNLSGQAQRKIESFVYQLQREARRFDKDDY-
2	SPARKS	2gjga	0.193	0.955	4.436	threading_2	SDAPQPPKVLSTPLEIAANLRQLQESHDPLIITFHDHRFQSYVVHVDRESNTLALEIPRDGEKFIENGEHFRVEGFHDGVRIAWECDALKISEVDGHRCYSGPLPQEVTYHQRRNAFRAALKLSQLVDIILAHLKGNGARGKLLDISATGCKLRFEGNVEDRLQLGQVYERFKAGNPLGLVDTVELRHLHYE---------ERINTTFAGVRFHNLSGQAQRKIESFVYQLQREARRFDK--DD
3	PROSPECT2	2gjgA	0.193	0.955	3.632	threading_3	FDAPQPPKVLSTPLEIAANLRQLQESHDPLIITFHDHRFQSYVVHVDRESLALDEI-PRDGEKFIENGEHFRVEGFHDGVRIAWECDHAKISEVDGHRCYSGPLPQEVTYHQRRNAFRAALKLSQLVDIILDGLKGNGARGKLLDISATGCKLRFEGNVEDRLQLGQVYERFKAGNPLGLVDTVELRHLHYEERI---------NTTFAGVRFHNLSGQAQRKIESFVYQLQREARRFDKD-DY
4	PPA-I	2gjgA	0.193	0.955	5.904	threading_4	SDAPQPPKVLSTPLEIAANLRQLQESHDPLIITFHDRRFQSYVVHVDRESLALDEIPRDG-EKFIENGEHFRVEGFHDGVRIAWECDHAKISEVDGHRCYSGPLPQEVTYHQRRNAFRAALKLSQLVDIILDHLKGNGARGKLLDISATGCKLRFEGNVEDRLQLGQVYERFKAGNPLGLVDTVELRHLHYEE---------RINTTFAGVRFHNLSGQAQRKIESFVYQLQREARRFDKDDY-
5	HHPRED-l	3kyf_A	0.206	0.914	8.117	threading_5	---PQPPKVLSTPLEIAANLRQLQESHDPLIITFHDRRFQSYVVHVDSNTLALDEMIPRDGEKFIENGEHFRVEGFHDGVRIAWECDHLKISEVDGHRCYSGPLPQEVTYHQRRNAFRAALKLSQLVDIILDGAGNGAMRGKLLDISATGCKLRFEGNVEDRLQLGQVYERFKAGNPL-GLVDTMVELRHLHYEER-------INTTFAGVRFHNLSGQAQRKIESFVYQLQRE----------
6	HHPRED-g	3kyf_A	0.203	0.910	7.180	threading_6	---PQPPKVLSTPLEIAANLRQLQESHDPLIITFHDRRFQSYVVHVDSNTLALDEMIPRDGEKFIENGEHFRVEGFHDGVRWECDHALKIS-EVDGHRCYSGPLPQEVTYHQRRNAFRAALKLSQLVDIILDGAGNGAMRGKLLDISATGCKLRFEGNVEDRLQLGQVYERFKAGNPL-GLVDTMVELRHLHYEER-------INTTFAGVRFHNLSGQAQRKIESFVYQLQRE----------
7	SP3	2gjga	0.194	0.951	4.238	threading_7	SDAPQPPKVLSTPLEIAANLRQLQESHDPLIITFHDHRFQSYVVHVDRESNTLALEIPRDGEKFIENGEHFRVEGFHDGVRIAWECDALKISEVDGHRCYSGPLPQEVTYHQRRNAFRAALKLSQLVDIILAHLKGNGARGKLLDISATGCKLRFEGNVEDRLQLGQVYERFKAGNPLGLVDTVELRHLHYE---------ERINTTFAGVRFHNLSGQAQRKIESFVYQLQREARRFD---KD
8	SAM-T99	2gjgA	0.200	0.943	6.436	threading_8	-DAPQPPKVLSTPLEIAANLRQLQESHDPLIITFHDRRFQSYVVHVDRESLALDEIP-RDGEKFIENGEHFRVEGFHDGVRIAWECDHLKISEVDGHRCYSGPLPQEVTYHQRRNAFRAALKLSQLVDIILDGLKGNGARGKLLDISATGCKLRFEGNVEDRLQLGQVYERFKAGNP-LGLVD-TVELRHLHYEERIN-------TTFAGVRFHNLSGQAQRKIESFVYQLQREARRFDKD---
9	MUSTER	1ylnA	0.151	0.869	1.433	threading_9	---------TVSTINSTDALAMVEHSELTLSITTPVGVCRTPFIGTHTDKLLVEMPKISADDYFFQEGFWMNIRAISPGALIHFRSQLMHILQ-EPVPMAFLSIPNTMQVSQLRKEPRFEL----NLAGKVLF-DEHRGDCELRDLSRSGCRFITPPL-GKTYQVG-DLVALEIFSDLRGFPPLTGKICNLQRSL---------HHARYGLEFNEEGRNNAKNLLAQKFNGTKL------TLNA
10	SPARKS	1ylna	0.163	0.881	1.533	threading_10	VSTIN----------STDALAMVEHSELTLSITTPVGVCRTPFIGTHTDKLLVEMPKISADDYFFQEGFWMNIRAISPGALIHFRSQLMHIL-QEPVPMAFLSIPNTMQVSQLRKEPRFELNLAGKVLF-----DEHRGDCELRDLSRSGCRFITP-PLGKTYQVGD-LVALEIFSDLRGTKTFPPLTGKICNLQRSLHH------ARYGLEF---NEEGRNNAKNLLAQLKFNGTKLT--LNA

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.544 to 1ylnA SCOP code=b.45.2.1	TM-score=0.543 to 1ylnA SCOP code=b.45.2.1	TM-score=0.541 to 1ylnA SCOP code=b.45.2.1	TM-score=0.542 to 1ylnA SCOP code=b.45.2.1	TM-score=0.537 to 1ylnA SCOP code=b.45.2.1