Template-based Modeling Results for YCGM_ECOLI


  Submitted Primary Sequence

>Length 219
MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRVL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRVL
CCEEECCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCEEEECCCCEECCCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHEEEEEEECCHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEECHHHCCCCCCEEEEEEECCEEEECCCHHHCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRVL
431111232121312101000000000200331232113200000203100042322000133122010100000000121530223101200000000000012001120332222022021021001000000003102113201000001221223121221013010000000301202200000000041112032011010102232122223
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRVL
1MUSTER1nr9A0.9850.9364.534threading_1HYQHHNWQGALLDYPVSKVVCVGSNY----------APEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDVQGK-KKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADI-HKIVPLIAY--KFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRVL
2SPARKS3rr6a0.3680.9685.744threading_2TGRQWPLADVRLLAPISKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIVIGRPCKDVPAARAAENILGYTIGNDVSARDHQRAD----GQWTRAKGHDTFCPLGPWIVTD---LDPADLEIRTEVNGQVRQRSRTSLLLHDVGAIVEWVSAVMTLLPGDVILTGTPEGVGPIVDGDTVSVTIEGIGTLSNPV
3PROSPECT23l53A0.4470.9824.811threading_3AELIL--NQRPYPRDLGKIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEDWQAIGLTLEKNGQFQQQGSSAELF-PILPLIAH-SEHFSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLDNVLLTCI
4PPA-I1nr9A0.9810.9416.989threading_4HYQHHNWQGALLDYPVSKVVCVGSNY----------APEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDVQGK-KKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADI-HKIVPLIAYS-KFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRVL
5HHPRED-l1saw_A0.4470.9004.310threading_5---------RPLSRFGKNIVCVGRNYA-----------SEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFV-PKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVMTFKV-
6HHPRED-g1wzo_A0.3510.9363.710threading_6AGEAHRPEDVTWLLPFGKILGVALNYA------GLSRPEEPALFWKPNTSLLPHKGVVLYPKGARFVHYEVELAVVVGRPMKRVRAKDALDYVLGYTIANDLVARDYV-------RPPIRAKGRDTFLPLGPFLVV-EEVEDPQDLWLRAYVNGELRQEGHTSRMLYSVAELLEFISEFMTLEPYDVLLTGTPKGISQVRPGDVMRLEIEGLGALENPI
7SP33rr6a0.3680.9685.497threading_7TGRQWPLADVRLLAPISKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIVIGRPCKDVPAARAAENILGYTIGNDVSARDHQRAD----GQWTRAKGHDTFCPLGPWIVTDL---DPADLEIRTEVNGQVRQRSRTSLLLHDVGAIVEWVSAVMTLLPGDVILTGTPEGVGPIVDGDTVSVTIEGIGTLSNPV
8SAM-T991sawB0.4240.9274.563threading_8----ASRPLSRFWEWGKNIVCVGRNYA-----------SEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEK-IPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKV
9MUSTER3l53A0.4390.9774.362threading_9--AELILNQRPYPRDLGKIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEEWQAIGLTLEKNGQFQQQGSSAEL-FPILPLIAH--EHFSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLENVLLTCD
10SPARKS3r6oa0.2800.9455.389threading_10SDELVPLDSVALGAPPGQVIALGFNYPTH----------DPVVFMKSPTSISGPRDAVIAPRTSHALDYEIEIAVVIGKPGYRIERSQAIKHVAGYMLANDITARDVALP--FGQAQVVRGKGYPTFCPTGPWLFTTGSDTTFETFDFELRINGELRQSGSTVDMTLGFAEVVETVSATIALRAGDIILTGTPGGCGFLRPGDVIEAHSAKLGKMRLPV

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.961 to 1nr9A
TM-score=0.986 to native
SCOP code=d.177.1.1		 TM-score=0.962 to 1nr9A
TM-score=0.990 to native
SCOP code=d.177.1.1		 TM-score=0.863 to 1sawB
TM-score=0.866 to native
SCOP code=d.177.1.1		 TM-score=0.887 to 1nr9A
TM-score=0.915 to native
SCOP code=d.177.1.1		 TM-score=0.959 to 1nr9A
TM-score=0.985 to native
SCOP code=d.177.1.1

  Experimental Structure

Download 1nr9B
SCOP code=d.177.1.1