Template-based Modeling Results for YCGG_ECOLI

Submitted Primary Sequence

>Length 507
MRNTLIPILVAICLFITGVAILNIQLWYSAKAEYLAGARYAANNINHILEEASQATQTAVNIAGKECNLEEQYQLGTEAALKPHLRTIIILKQGIVWCTSLPGNRVLLSRIPVFPDSNLLLAPAIDTVNRLPILLYQNQFADTRILVTISDQHIRGALNVPLKGVRYVLRVADDIIGPTGDVMTLNGHYPYTEKVHSTKYHFTIIFNPPPLFSFYRLIDKGFGILIFILLIACAAAFLLDRYFNKSATPEEILRRAINNGEIVPFYQPVVNGREGTLRGVEVLARWKQPHGGYISPAAFIPLAEKSGLIVPLTQSLMNQVARQMNAIASKLPEGFHIGINFSASHIISPTFVDECLNFRDSFTRRDLNLVLEVTEREPLNVDESLVQRLNILHENGFVIALDDFGTGYSGLSYLHDLHIDYIKIDHSFVGRVNADPESTRILDCVLDLARKLSISIVAEGVETKEQLDYLNQNYITFQQGYYFYKPVTYIDLVKIILSKPKVKVVVE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRNTLIPILVAICLFITGVAILNIQLWYSAKAEYLAGARYAANNINHILEEASQATQTAVNIAGKECNLEEQYQLGTEAALKPHLRTIIILKQGIVWCTSLPGNRVLLSRIPVFPDSNLLLAPAIDTVNRLPILLYQNQFADTRILVTISDQHIRGALNVPLKGVRYVLRVADDIIGPTGDVMTLNGHYPYTEKVHSTKYHFTIIFNPPPLFSFYRLIDKGFGILIFILLIACAAAFLLDRYFNKSATPEEILRRAINNGEIVPFYQPVVNGREGTLRGVEVLARWKQPHGGYISPAAFIPLAEKSGLIVPLTQSLMNQVARQMNAIASKLPEGFHIGINFSASHIISPTFVDECLNFRDSFTRRDLNLVLEVTEREPLNVDESLVQRLNILHENGFVIALDDFGTGYSGLSYLHDLHIDYIKIDHSFVGRVNADPESTRILDCVLDLARKLSISIVAEGVETKEQLDYLNQNYITFQQGYYFYKPVTYIDLVKIILSKPKVKVVVE
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCEEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEECCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHCCCCHHHHHHHHHHHHCCCHHHEEEEECHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRNTLIPILVAICLFITGVAILNIQLWYSAKAEYLAGARYAANNINHILEEASQATQTAVNIAGKECNLEEQYQLGTEAALKPHLRTIIILKQGIVWCTSLPGNRVLLSRIPVFPDSNLLLAPAIDTVNRLPILLYQNQFADTRILVTISDQHIRGALNVPLKGVRYVLRVADDIIGPTGDVMTLNGHYPYTEKVHSTKYHFTIIFNPPPLFSFYRLIDKGFGILIFILLIACAAAFLLDRYFNKSATPEEILRRAINNGEIVPFYQPVVNGREGTLRGVEVLARWKQPHGGYISPAAFIPLAEKSGLIVPLTQSLMNQVARQMNAIASKLPEGFHIGINFSASHIISPTFVDECLNFRDSFTRRDLNLVLEVTEREPLNVDESLVQRLNILHENGFVIALDDFGTGYSGLSYLHDLHIDYIKIDHSFVGRVNADPESTRILDCVLDLARKLSISIVAEGVETKEQLDYLNQNYITFQQGYYFYKPVTYIDLVKIILSKPKVKVVVE
441001010000000000000100111120212021002200210230022012003100310223012300220011111222010000022210000011123212231211331100002113214410000000213322000000020010001221321310020022001311211213222000020112313112101110110011013321011100100000001100210230020132013004421000001000104411010010001021122020001100000240010020020001200210220134123201000000012023320131013003212233200101002220221231002102203510010000010000000000220321101012000140322331120010002003502010002112143102102423022010000131021210020023223221225
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRNTLIPILVAICLFITGVAILNIQLWYSAKAEYLAGARYAANNINHILEEASQATQTAVNIAGKECNLEEQYQLGTEAALKPHLRTIIILKQGIVWCTSLPGNRVLLSRIPVFPDSNLLLAPAIDTVNRLPILLYQNQFADTRILVTISDQHIRGALNVPLKGVRYVLRVADDIIGPTGDVMTLNGHYPYTEKVHSTKYHFTIIFNPPPLFSFYRLIDKGFGILIFILLIACAAAFLLDRYFNKSATPEEILRRAINNGEIVPFYQPVVNGREGTLRGVEVLARWKQPHGGYISPAAFIPLAEKSGLIVPLTQSLMNQVARQMNAIASKLPEGFHIGINFSASHIISPTFVDECLNFRDSFTRRDLNLVLEVTEREPLNVDESLVQRLNILHENGFVIALDDFGTGYSGLSYLHDLHIDYIKIDHSFVGRVNADPESTRILDCVLDLARKLSISIVAEGVETKEQLDYLNQNYITFQQGYYFYKPVTYIDLVKIILSKPKVKVVVE
1	MUSTER	3pjwA	0.182	0.811	2.755	threading_1	----------------------------------AALFQEQAERSEKLRTESYQ------NLTGLANRRYFEMQLNARVSNP---------EQASSGY-------LLLLRVKDLANQRLGGQRTDELLKAVGEQLCAKYPETQNLVTRIRGGEF-AVLAPGM-TREEALQLAQSLDSALSSLYATGATDVAGLAPFA-HGDSPQAVLSLGDQALAQAEGQGEQNWAC-------LDGDD------HHAWHRLLDQALNQRRFELFFQPVVAAQDTLVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTARLDRLMLERVLEQMAGH------EESLALNLSSATLADPQALNKVFEILRAHSNLGARLTLEIGEEQLP-EQAVLEQLTRRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELSVIREMGLYGVQGQLFGEPKPWG-----------------
2	SPARKS	3n3ta	0.336	0.499	5.532	threading_2	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ERLTLDTRLRQALERNELVLHYQPIVELASGRIVGGEALVRWEDPERGLV-PSAFIPAAEDTGLIVALSDWVLEACCTQLRAWQQQGRDDLTLSVNISTRQFEGEHLTRAVDRALARSGLRPDCLELEITENVLVT--DEVRTCLDALRARGVRLALDDFGTGYSSLSYLSQLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLG-EVVAEGIETAQQYAFLRDRGCEFGQGNL-STPQAADAFASLLDRQKAS-----
3	PROSPECT2	3pjwA	0.193	0.706	3.413	threading_3	A-----------------------ALFQEQAERSEKLRTESYRYFEMQLNARGQRTDELL--------KAVGEQLSREC--------------------------------------------AKYPETQNLAVLAP------------------------GMTREEALQLAQSLDSALSGATDVAAVASIGLAPFAH--------GDSPQAVLSL------------------GDQALAQAEGQHHAWHRLLDQALNQRRFELFFQPVVAAQDTQVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTARLDRLMLERVLEQMAGH------EESLALNLSSATLADPQALNKVFEILRAHSNLGARLTLEIGEEQLP-EQAVLEQLTRRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELSVIREMGLYGVQGQLFGEPKPW-----------------G
4	PPA-I	3pjwA	0.175	0.801	5.060	threading_4	---------------------------------------------AALFQEQAERSEKLRTESYLANRRYFEMQLNARVSNP----------------EQASSGYLLLLRVKDLAGLNQRLGGQRKAVGEQLSRECAKYPETQNLVTRIRGGEF--AVLAPGMTREEALQLAQSLDSALSSLYATGATDSIGLAPFA-HGDSPQAVLSLGDQALAQAEGQGEQNWAC-------LDGDD------HHAWHRLLDQALNQRRFELFFQPVVAAQDTQVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTARLDRLMLERVLEQMAGH------EESLALNLSSATLADPQALNKVFEILRAHSNLGARLTLEIGEEQLP-EQAVLEQLTRRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELSVIREMGLYGVQGQLFGEPKPWG-----------------
5	SP3	3gfxa	0.187	0.738	5.566	threading_5	----------------------------------------------------------------------------------------MLTT--LIYRSQVHPDRPP-----------------VDLDALVHRASSKNLPLGITGILLFNGLQFFQVLEGT---EEALESLFSEIQSDPYRRFHGTGMRILDLRLFETDGALEEILRFSTDRMFRLLSAFIADGGRY-------CLPEPLQPSRWMMMPATAAPQHLPGQPCQFALQAIVEPAKKRVSSFEALIRS--PTGG-SPVEMFAAIAAEDRYRFDLESKAYAFALAGQLPL-----GKHQLAINLLPGSYHHPDAVGWLMDSLLAAGLRPDQVLIEVTETEVITCFDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRPCLNGIGEICWPVA--------
6	HHPRED-l	3hvb_A	0.219	0.495	5.013	threading_6	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAQRGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKIDRWVILNSIKLLAEHRAKG-HQTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQV-ENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYLQGPSQAMDYDFS------------
7	MUSTER	3gg1B	0.179	0.748	2.277	threading_7	----------------------------------------------------------------------------------------MLTT--LIYRSQVHPDRPPV-DLDALVHRASSKNLPLGI----TGILLFN---GLQFFQVLEGEEALESLFSEIQSDPRHRDVVE-LMRDYSAYRRFHGTGMRILDLFETDGALEEEPVNDRMFRLLSAFIADGGRYCLP-------------EPLQPSRWMMMAPQHLPGQPCQFALQAIVEPAKKRVSSFEALIRS--PTGG-SPVEMFAAIAAEDRYRFDLESKAYAFALAGQLPL-----GKHQLAINLLPGSLYHPDAVGWLMDSLLAAGLRPDQVLIEVTETEVITCFDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRPCLNGIGICWPVAR--------
8	HHPRED-g	3hvb_A	0.219	0.495	4.999	threading_8	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAQRGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKIDRWVILNSIKLLAEHRAKGH-QTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQV-ENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYLQGPSQAMDYDFS------------
9	SAM-T99	3ii8B	0.341	0.491	6.733	threading_9	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ERLTLDTRLRQALERNELVLHYQPIVELASGRIVGGEALVRWEDPERGLV-PSAFIPAAEDTGLIVALSDWVLEACCTQLRAWQQQGRDDLTLSVNISTRQFEGEHLTRAVDRALARSGLRPDCLELEITENVLV--TDEVRTCLDALRARGVRLALDDFGTGYSSLSYLSQLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLG-EVVAEGIETAQQYAFLRDRGCEFGQGNL-STPQAADAFASLLDR---------
10	SPARKS	3gfxa	0.184	0.738	5.407	threading_10	----------------------------------------------------------------------------------------------------------MLTTLIYRSQVHPD-RPPVDLDALVHRASSKNLPLGITGILLFNGLQFFQVL---EGTEEALESLFSEIQSDPYRRFHGTGMRILDLRLFETDGALEEILRFSTDRMFRLLSAFIADGGRY-------CLPEPLQPSRWMMMPATAAPQHLPGQPCQFALQAIVEPAKKRVSSFEALIRSPT---GGSPVEMFAAIAAEDRYRFDLESKAYAFALAGQ-----LPLGKHQLAINLLPGSLHHPDAVGWLMDSLLAAGLRPDQVLIEVTETEVITCFDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRPCLNGIGEICWPVA--------

Predicted Tertiary Structure


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TM-score=0.589 to 2basA SCOP code=c.1.33.1	TM-score=0.589 to 2basA SCOP code=c.1.33.1	TM-score=0.617 to 2basA SCOP code=c.1.33.1	TM-score=0.589 to 2basA SCOP code=c.1.33.1	TM-score=0.592 to 2basA SCOP code=c.1.33.1