Template-based Modeling Results for YCGF_ECOLI

Submitted Primary Sequence

>Length 403
MLTTLIYRSHIRDDEPVKKIEEMVSIANRRNMQSDVTGILLFNGSHFFQLLEGPEEQVKMIYRAICQDPRHYNIVELLCDYAPARRFGKAGMELFDLRLHERDDVLQAVFDKGTSKFQLTYDDRALQFFRTFVLATEQSTYFEIPAEDSWLFIADGSDKELDSCALSPTINDHFAFHPIVDPLSRRIIAFEAIVQKNEDSPSAIAVGQRKDGEIYTADLKSKALAFTMAHALELGDKMISINLLPMTLVNEPDAVSFLLNEIKANALVPEQIIVEFTESEVISRFDEFAEAIKSLKAAGISVAIDHFGAGFAGLLLLSRFQPDRIKISQELITNVHKSGPRQAIIQAIIKCCTSLEIQVSAMGVATPEEWMWLESAGIEMFQGDLFAKAKLNGIPSIAWPEKK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLTTLIYRSHIRDDEPVKKIEEMVSIANRRNMQSDVTGILLFNGSHFFQLLEGPEEQVKMIYRAICQDPRHYNIVELLCDYAPARRFGKAGMELFDLRLHERDDVLQAVFDKGTSKFQLTYDDRALQFFRTFVLATEQSTYFEIPAEDSWLFIADGSDKELDSCALSPTINDHFAFHPIVDPLSRRIIAFEAIVQKNEDSPSAIAVGQRKDGEIYTADLKSKALAFTMAHALELGDKMISINLLPMTLVNEPDAVSFLLNEIKANALVPEQIIVEFTESEVISRFDEFAEAIKSLKAAGISVAIDHFGAGFAGLLLLSRFQPDRIKISQELITNVHKSGPRQAIIQAIIKCCTSLEIQVSAMGVATPEEWMWLESAGIEMFQGDLFAKAKLNGIPSIAWPEKK
CCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCEEECCCCCEEEEEEEEECCCCCHHCCEEHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHCCCHHHEEEEECHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHCHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLTTLIYRSHIRDDEPVKKIEEMVSIANRRNMQSDVTGILLFNGSHFFQLLEGPEEQVKMIYRAICQDPRHYNIVELLCDYAPARRFGKAGMELFDLRLHERDDVLQAVFDKGTSKFQLTYDDRALQFFRTFVLATEQSTYFEIPAEDSWLFIADGSDKELDSCALSPTINDHFAFHPIVDPLSRRIIAFEAIVQKNEDSPSAIAVGQRKDGEIYTADLKSKALAFTMAHALELGDKMISINLLPMTLVNEPDAVSFLLNEIKANALVPEQIIVEFTESEVISRFDEFAEAIKSLKAAGISVAIDHFGAGFAGLLLLSRFQPDRIKISQELITNVHKSGPRQAIIQAIIKCCTSLEIQVSAMGVATPEEWMWLESAGIEMFQGDLFAKAKLNGIPSIAWPEKK
5433111212033312132023001202432231300000001011002012113310310031003122011002001101101312400010010221212200100123121312111311001001001232420010212231121111201122012001111232100010000032320000100011111112110001232120120112000100110332312200000000011113232002101300423202230010100211022213200200310440001000011000000010023032110100210013034122320001000200220301000201122310110231302201000002022321222212334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLTTLIYRSHIRDDEPVKKIEEMVSIANRRNMQSDVTGILLFNGSHFFQLLEGPEEQVKMIYRAICQDPRHYNIVELLCDYAPARRFGKAGMELFDLRLHERDDVLQAVFDKGTSKFQLTYDDRALQFFRTFVLATEQSTYFEIPAEDSWLFIADGSDKELDSCALSPTINDHFAFHPIVDPLSRRIIAFEAIVQKNEDSPSAIAVGQRKDGEIYTADLKSKALAFTMAHALELGDKMISINLLPMTLVNEPDAVSFLLNEIKANALVPEQIIVEFTESEVISRFDEFAEAIKSLKAAGISVAIDHFGAGFAGLLLLSRFQPDRIKISQELITNVHKSGPRQAIIQAIIKCCTSLEIQVSAMGVATPEEWMWLESAGIEMFQGDLFAKAKLNGIPSIAWPEKK
1	MUSTER	3gg1B	0.403	0.968	3.217	threading_1	MLTTLIYRSQVHPDRPPVDLDALVHRASSKNLPLGITGILLFNGLQFFQVLEGTEEALESLFSEIQSDPRHRDVVELMRDYSAYRRFHGTGMRILDLRLFETDGALEEILRFSTFGVTEPVNDRMFRLLSAFIADGGRYCLPEPLQ-----------PSRWMMMAPQHLPGQPFALQAIVEPAKKRVSSFEALIRSPTSPVEMFAAIAAEDRYRFDLESKAYAFALAGQLPL--GKHQLAINLLPGSLYHHPDAVGWLMDSLLAAGLRPDQVLIEVTETEVITCFDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRPCLNGIGEICWPVAR
2	SPARKS	3gfxa	0.384	0.955	6.333	threading_2	MLTTLIYRSQVHPDRPPVDLDALVHRASSKNLPLGITGILLFNGLQFFQVLEGTEEALESLFSEIQSDPRHRDVVELMRDYSAYRRFHGTGM----------RILDLRLFETDGALEEILRFSTDRMFRLLSAFIADGGRYCL-----PEPLQPSRWMMMPATAAPQHLPGQPFALQAIVEPAKKRVSSFEALIRSPTGPVEMFAAIAAEDRYRFDLESKAYAFALAGQL--PLGKHQLAINLLPGSLYHHPDAVGWLMDSLLAAGLRPDQVLIEVTETEVITCFDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRPCLNGIGEICWPVA-
3	PROSPECT2	3gfxA	0.407	0.963	3.717	threading_3	MLTTLIYRSQVHPDRPPVDLDALVHRASSKNLPLGITGILLFNGLQFFQVLEGTEEALESLFSEIQSDPRHRDVVELMRDYSAYRRFHGTGMRILDLRLFETDGALEEILRFSTPV-----NDRMFRLLSAFIADGGRYCLP-------EPLQPSRWMMMPATAAPQHLPGQPFALQAIVEPAKKRVSSFEALIRSPTGPVEMFAAIAAEDRYRFDLESKAYAFAL--AGQLPLGKHQLAINLLPGSLYHHPDAVGWLMDSLLAAGLRPDQVLIEVTETEVITCFDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRPCLNGIGEICWP-VA
4	PPA-I	3gg1B	0.403	0.968	6.271	threading_4	MLTTLIYRSQVHPDRPPVDLDALVHRASSKNLPLGITGILLFNGLQFFQVLEGTEEALESLFSEIQSDPRHRDVVELMRDYSAYRRFHGTGMRILDLRLFETDGALEEILRFSTFGVTEPVNDRMFRLLSAFIADGGRYCLPEPLQPS-----------RWMMMAPQHLPGQPFALQAIVEPAKKRVSSFEALIRSPTGGVEMFAAIAAEDRYRFDLESKAYAFALAGQL--PLGKHQLAINLLPGSLYHHPDAVGWLMDSLLAAGLRPDQVLIEVTETEVITCFDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRPCLNGIGEICWPVAR
5	HHPRED-l	3gfz_A	0.413	0.973	7.022	threading_5	MLTTLIYRSQVHPDRPPVDLDALVHRASSKNLPLGITGILLFNGLQFFQVLEGTEEALESLFSEIQSDPRHRDVVELMRDYSAYRRFHGTGMRILDLRLFETDGALEEILRFST-----PVNDRMF--RLLSAFIADGGRY-CLPEPLQPSRWMMMPA--TAAPQHLPGQPCQFALQAIVEPAKKRVSSFEALIRSPTGGSPVEMFAAIAAEDRYRFDLESKAYAFALAGQLPLGKHQLAINLLPGSLYHHPDAVGWLMDSLLAAGLRPDQVLIEVTETEVITCFDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRPCLNGIGEICWPVA-
6	HHPRED-g	3hvb_A	0.149	0.600	4.827	threading_6	----------------------------------------------------------------------------------------------------------------------------------------------------------AAQRGDVIAILQQALETNSFLFQPVISLRGDSHENYEVLLRLLNPPPAEFLHAAKEAGLAEKIDRWVILNSIKLLAEHRGHQTKLFVHLSSASL-QDPGLLPWLGVALKAARLPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQV-ENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYLQGPSQAMDYDFS-----
7	SP3	3gfxa	0.384	0.955	6.171	threading_7	MLTTLIYRSQVHPDRPPVDLDALVHRASSKNLPLGITGILLFNGLQFFQVLEGTEEALESLFSEIQSDPRHRDVVELMRDYSAYRRFHGTGMR----------ILDLRLFETDGALEEILRFSTDRMFRLLSAFIADGGRYC-----LPEPLQPSRWMMMPATAAPQHLPGQPFALQAIVEPAKKRVSSFEALIRSPTGPVEMFAAIAAEDRYRFDLESKAYAFALAGQLPL--GKHQLAINLLPGSLYHHPDAVGWLMDSLLAAGLRPDQVLIEVTETEVITCFDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRPCLNGIGEICWPVA-
8	SAM-T99	3gg1B	0.399	0.926	5.310	threading_8	---------------------DALVHRASSKNLPGITGILLFNGLQFFQVLEGTEEALESLFSEIQSDPRHRDVVELMRDYSAYRRFHGTGMRILDLRLFETDGALEEILRFSTFGVTEPVNDRMFRLLSAFIADGGRYCLPEPLQPSRWMMM---------APQHLPGQPCQFALQAIVEPAKKRVSSFEALIRSPTGGSPVEMFAAIAAEDRYRFDLESKAYAFALAGQLPLGKHQLAINLLPGSLYHHPDAVGWLMDSLLAAGLRPDQVLIEVTETEVITCFDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRPCLNGIGEICWPVAR
9	MUSTER	3pjwA	0.169	0.911	2.676	threading_9	NLTGLANRRYF-----EMQLNARVSNP----EQASSGYLLLLRVKDLAGLNQRLDELLKAVGEQLSREPETQNLVTRIRGGQLAQSLDSALSSLYATGATDVASIGLAPFA-HGDSPQAVLSLGDQALAQAEGQGEQNWACL-----DGDD------HHAWHRLLDQALNQRRLFFQPVVAAQDTLVLHYKVLSRLLDEPAGRFLPWLERFGWTARLDRLMLERVLEQMAGH---EESLALNLSSATL-ADPQALNKVFEILRAHSNLGARLTLEIGEEQLP-EQAVLEQLTRRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELSVIREMGLYGVQGQLFGEPKPWG----------
10	SPARKS	3n3ta	0.231	0.600	5.387	threading_10	------------------------------------------------------------------------------------------------------------------------------------------------------------ERLTLDTRLRQALERNELHYQPIVELASGRIVGGEALVRWEDPEPSAFIPAAEDTGLIVALSDWVLEACCTQLRAWGRDDLTLSVNISTRQF-EGEHLTRAVDRALARSGLRPDCLELEITENVLVT--DEVRTCLDALRARGVRLALDDFGTGYSSLSYLSQLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLG-EVVAEGIETAQQYAFLRDRGCEFGQGNL-STPQAADAFASLLDRQK

Predicted Tertiary Structure


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TM-score=0.620 to 2basA SCOP code=c.1.33.1	TM-score=0.619 to 2basA SCOP code=c.1.33.1	TM-score=0.627 to 2basA SCOP code=c.1.33.1	TM-score=0.627 to 2basA SCOP code=c.1.33.1	TM-score=0.621 to 2basA SCOP code=c.1.33.1