Template-based Modeling Results for YCGB_ECOLI

Submitted Primary Sequence

>Length 510
MATIDSMNKDTTRLSDGPDWTFDLLDVYLAEIDRVAKLYRLDTYPHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITECEERYGVDEVERLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRYPSEPQENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFFTVLDDDRHNYLEISAIHNEEGYREIRNRLSSQYNLSNLEPNIQIWNVDLRGDRSLTLRYIPHNRAPLDRGRKEVLKHVHRLWGFDVMLEQQNEDGSIELLERCPPRMGNL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MATIDSMNKDTTRLSDGPDWTFDLLDVYLAEIDRVAKLYRLDTYPHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITECEERYGVDEVERLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRYPSEPQENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFFTVLDDDRHNYLEISAIHNEEGYREIRNRLSSQYNLSNLEPNIQIWNVDLRGDRSLTLRYIPHNRAPLDRGRKEVLKHVHRLWGFDVMLEQQNEDGSIELLERCPPRMGNL
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCHHHHHHCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MATIDSMNKDTTRLSDGPDWTFDLLDVYLAEIDRVAKLYRLDTYPHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITECEERYGVDEVERLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRYPSEPQENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFFTVLDDDRHNYLEISAIHNEEGYREIRNRLSSQYNLSNLEPNIQIWNVDLRGDRSLTLRYIPHNRAPLDRGRKEVLKHVHRLWGFDVMLEQQNEDGSIELLERCPPRMGNL
553233233322201411311131022002101300431502113110100102100100110000010100100110111120142123100010001222000000231220000000000010000003200002111212000100100130022013310131022001001001310123132234222322323232333112210221122133433332223233223221210010022102202201220020012001111122102011200000000000010122230123000100310110001122212121100010000000100230032123113221232212311200220032021220012001230032030000112344220100011223103301320021031221200000111324232100010002232112400220020003002120001112342212011202343348
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MATIDSMNKDTTRLSDGPDWTFDLLDVYLAEIDRVAKLYRLDTYPHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITECEERYGVDEVERLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRYPSEPQENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFFTVLDDDRHNYLEISAIHNEEGYREIRNRLSSQYNLSNLEPNIQIWNVDLRGDRSLTLRYIPHNRAPLDRGRKEVLKHVHRLWGFDVMLEQQNEDGSIELLERCPPRMGNL
1	PROSPECT2	1w36B1	0.090	0.892	1.593	threading_1	MSDVAETLDPLRLPLQGERLTFTIAALYLRLLLGLGGSAAFPRPLTLLVVTFTEAATAEL-----------RGRIRSNIHELRIACLRETT-------------------DNPLYERLL------------------EEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQAREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDIRDLVITRALAEIRETVAREKRRRDDMLSRLDSALRSESGEVLAAAIRTRFQQYRIFRRIWHHQPADIFTYMKARSEVHAHYTLD------TNWRSAPGM-VNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGGDYQSTMAQVCAAQIRDQRGEALLMNGDDARPVISVLVRSRQEAAQVRDALTLRDRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRAERLAEDLRLLYVALTRSVWHCSLGLCDDDIAWQTAQTGDNQV
2	PPA-I	2bw3A	0.072	0.873	1.051	threading_2	-------SHQSRELKTVS---ADCKKEAIEKCAQWVVRDCRPFSAVSSGFIDIKFFIKVKAEYGEHVNVEKEKKALIGREIKSAVEKDGASATIDLWTDNYIKRNFLGERSTAENIYKKLKAIFSQFRGANVVKSLANNIRINCSSHLLSNVLENSFEETPELNPILACKNIVKYFKKANLQHRLRSSCPTRWNSTYTLRSILDNWESVIQILSEAGETQRIVHINKSIIQTVNILDGFERIFKELQTCSSPSLC----FVVPSILKVKEICSPDVGDVADI--AKLKVNIIKNVRIIWEENLSIWHYTAFFFYPPA-----LHQQEKVA----QIKEFCLSKEDLELINRSSFNELSATQLNQDISTTSFFFPQLTQNNSREPPVCPSDEFEFYRKEIVILSEDFKVEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITEKR----------NRIGLLFLNSFYKNFCK------------------------------
3	HHPRED-l	3iuk_A	0.147	0.667	1.038	threading_3	FATTLGLPGHETEYQ---DYSPAGAAAHAEATRLALELAGLEPS-DDVDAVTLDA-RERLGLELEIHQSGWDAASPA-QDIRAIFD--L---PTDTVAANEGYIASLRAADRKVAAARQIRIV-IEQGAFLRDELLPVAPEKDA---VGRERYSLASRSFTYAWGVQELERLISEQEKVAGQIKPGSNNDQIKGTDAL---KAW-QELSDRAVSELADVHFDIPDV-KEDDPGWWPAGTTWS-ETTTVFHVPG-HHLQVATLNNWRRNVC------WVSGHGEGWALYAEQL-L-ELGKLGTWTPEKGFDFLKANLDILGWP-------GQAPSYKVGQRLWEQIRAELESREGFDLKSFHSKALNIGLDVLRRAL-------------L------------------------------------------------------------------------------------------------------------------------
4	SP3	2v1xa	0.144	0.871	1.060	threading_4	--------------SSPAAWNKEWSGKVKDILQNV---FKLEKFPLQLETINVTAGKEVF--LVMPTGG-----GK-----SLCYQLALCSDGFTLVI-C-PLIS-LMEDQLMVLKQLISATMLNASSSKEHVKWVHAEMVNKNSLIEKIAKSKMFMSRLEKAYEARRFTRIVDEVHCCSQWGHDF--RPKALGILKRNHVLTDAQKILCIEKCFTFTA---SFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGII--------YCFSQKDSEQVTVGIAGAYH----------ANLETTVHRKWSANEIQVVV---ATVAFGMGIDPHSMSKSMENYYQESYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQNRVLMAQHFDEVW-ACNKMCDNCCKDSA----FERKNITEYCRDLIKILKQAEELNEKLTPLKLIDS-WMGKGAAKLRVAGVAPTLPREDLEKIIAHFLIQ-QY-LKEDYSFTAYATISYLKIGPKANLL
5	PROSPECT2	1gw5b	0.082	0.888	1.567	threading_5	SKYFTTNKKGEAELNNEKK---EKRKEAVKKVIAAMTVGK-----------DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP-------DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLNAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFI-----------LDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP---KDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVKEYATEVDVDFVRKAVRAIGRIKVEQSAERCVSTDIFRKYP-----NKYESIIATLCENLDSLDEPDARAAMIWIVEYAERIDNAD----------ELLESFLEGFHDESTQVQLTLLTAIVKLFLKK-------PSETQELVQQHKPPNAFV
6	HHPRED-l	3o0y_A	0.134	0.704	1.037	threading_6	SATLSQKIGISSDME---FYSPENEKQLRAELLSISNTIGIKLD-DITTKNNQQVMAGLTGEPNFNIGYIDWINGPLIDIQTADAAQNWLKVTLQGATSGHPFVNVFREQVIAKVSQVVYPAYQ-SVEKASE-QLLSEARSEGWAQPKGSVYYQDAIKQLIHQIGLDEVARISGVMNEILLAQGKGLNEPLYEDSIALLSDINGYITEVTAKMAPVFRTTPSYQVEVKSPVEVQYSANPKF-GLKTLTYHNPG-HHWQIALNPFLRRIA-------PYNAYTEGWALYSEQVAY-ELHD-KRWTREQAISYMSEQTGTMAWP-------GQALGYKLGMLKILSLREQAKAGDKFDLAEFHDVVGAVPMAVLSRNVNH-----WLDN--------K------------------------------------------------------------------------------------------------------------------
7	PROSPECT2	1qsaa	0.078	0.935	1.527	threading_7	---------------DSLDEQRSRYAQIKQAWDDVVEQMMLKDYPLYPYLQPAVTVTNFVRANP-----TLPPARTLQSRFVNELARREDWRGLLAFSPEKPYYYAKWNTGQSEEAWQGAKELWLNACDKLFSVWRASGKQDPLAYLERIRLATGLVTVLAGQMPADYQTIAIISLANNPNTVLTFARTTGATDFTRQMAAVAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLAKDEWRYWQADLLLEHQLMQQRGFYPMVAAQRIGEE---YELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARNLVKSKSKTEQAQLARYAFNNQWWDLSVQAT--IAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK--------VKSPVGASTVKMFSIPGYSSPGQLLDPLQYVYQQFGNNRIFLGNSAGRIDAVAYFMGDKPTLM
8	PROSPECT2	1jdha	0.094	0.859	1.521	threading_8	AVVNLIRAIPEKLLNDEDQ---VVVNKAAVMVHQLS-----KKEASRHAIMRSPQMVSAIVRTMQNTNDVEHNLSHHREGLLAIFKSGGIPALVKMLGSPVDTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL----------SVCSSNKPAIVEQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL----PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAI-PRLVQLLVRAHQDTQFMEEIVEGCTGALHILAR-------------------DVHNRIVIRGLFVQLLYSPI------------------------------ENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG
9	PROSPECT2	1w63A	0.092	0.941	1.457	threading_9	MPAPIRLRELIRTIRTARTQAEER-EMIQKECAAIRSSFREEDNTYRCRNV---AKLLYMHMLGYPAASQKFTDKRIGYLGAMLLLDERQDVHLLMTNHSTQFVKLLKTSNSYLRKKLCAVHVIRKVPELMEMPATKNLLNEKNHGVLHTSVVLLTESPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAM--NDILAQVATNTETSKNVGNAILYLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVN----GNNIRGMMKELCEPEFKADCASGIFLAAEKYAPSKRTTAGSYVRDDAVPNLIQLITNSVEAYTVQRLY--KAILGDY------------------SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRKKYDHMRSALLERMPVMEK
10	MUSTER	2ooeA	0.106	0.890	0.759	threading_10	MA--------EKKLEENPYWSIREAQN-IDKARKTYERL-VAQFPS-----SGRFWKLYIEA--------EIKAK-NYDKVEKLFQRCLMKVLHIDLWKC---LSYVRETKGKMAQAYDFALDKIGSYQIWVDYINFVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIE-DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQPQEAQQVDM----WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDI---WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYISTLLKKNMLLYFA-YADYEESRMKYEKVHS---YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFRHHVYVTAALMEYYCSKDIPEYVLAYISHLNEDNNTRVLFERVLTSGSLPP---------EKSGEIWARLAFESNIGDLASILKVEKRRFTAFR-----EEYEGKETALLVDR---KFMDL

Predicted Tertiary Structure


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TM-score=0.558 to 1uaaA SCOP code=c.37.1.19	TM-score=0.655 to 2bw3A SCOP code=a.270.1.1	TM-score=0.418 to 1ka4A SCOP code=d.92.1.5	TM-score=0.576 to 1oyyA SCOP code=a.4.5.43	TM-score=0.637 to 2vglB SCOP code=i.23.1.1