Template-based Modeling Results for YCFS_ECOLI

Submitted Primary Sequence

>Length 320
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGLDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGLDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL
CCCCHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCEECCCCEEEECCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCEEEEEEECCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGLDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL
55232210100000000000000001302212113222211022210002332110210032120011001220222212114211101122322123133300001122110000232320000000012322232212201010102122222212230101131322312211211121210100010012000000000102121113102000102220022002202220200002221201124301100101221344233323101100210021133223121300220023321000102333223434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGLDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL
1	MUSTER	1y7mA	0.348	0.503	1.406	threading_1	--------------------------------------------LTYQVKQ-GDTLNSIAADFRISTAALLQANPSLQAGLT-AGQSIVIPG-LPDPYTIPYHIAVSIGAKTLTLSLNNR--VKTYPIAVGKIL--TQTPTGEFYIINRQRNP---------------------------GGPFGAYWLSLSAAH--YGIHGTNNPASIGKAVSKGCIRH-NKDVIELASIVPNGTRVTINR------------------------------------------------------------------------------
2	PROSPECT2	1sezA1	0.086	0.909	1.476	threading_2	------------VSGLAAAYKLKI--HGLNVTVFEAEGKAGGKLRSVSQDESEGDVTFLIDSLGL-REKQQFPLSQNKRYIARNGTPVLLPSKTSANKKRQRGSFSFLGGQTLTELRLNSRVLELSCSCTEDSA------IDSWSIISASPHKRQSEEESFDAVITAPLCDVKSKIAKRGNPFLLNFIPEVDYVPLSVVITTFKREN-VKYPLEGFGVLVPSKEQQH-----GLKTLGTLFSSFPDR--APNNVYLYTTFSRNRELAKASRTELKEIVTSDLKQLLGLYGHNYDSVLDAIDKEKNLPGLFYAGNHRGGLS
3	SPARKS	1y7ma	0.342	0.503	3.198	threading_3	--------------------------------------------LTYQVKQ-GDTLNSIAADFRISTAALLQANPSLQAGLT-AGQSIVIP-GLPDPYTIPYHIAVSIGAKTLTLSLNN--RVKTYPIAVGKIL--TQTPTGEFYIINRQRN---------------------------PGGPFGAYWLSLSAAH--YGIHGTNNPASIGKAVSKGCIRH-NKDVIELASIVPNGTRVTINR------------------------------------------------------------------------------
4	PROSPECT2	1zatA	0.166	0.641	2.111	threading_4	KEQLASMNAIANVYVTDLGTKYNTSTNDTKFKSTKRGEVTVPVGTYSWTIQTDSETEALKK----------AILAGQDFTRSPI---VQGGTTADHPLIEDTYIEVDLENQHMWYYK-DGKVALETDIVSGKPTTP--TPAGVFYVWNKEEDATLKGT------------------NGTPYESPVNYWMPIDWTG--VGIHDSDWQPEYGGDGSHGCINTPPSVMKELFGMVEKGTPVLV-------------------------------------------------------------------------------F
5	PPA-I	1y7mA	0.348	0.503	1.878	threading_5	--------------------------------------------LTYQVKQ-GDTLNSIAADFRISTAALLQANPSLQAGLT-AGQSIVIP-GLPDPYTIPYHIAVSIGAKTLTLSLNNR--VKTYPIAVGKIL--TQTPTGEFYIINRQRNPGG---------------------------PFGAYWLSLSAAH--YGIHGTNNPASIGKAVSKGCIRH-NKDVIELASIVPNGTRVTINR------------------------------------------------------------------------------
6	HHPRED-l	1y7m_A	0.335	0.503	8.166	threading_6	--------------------------------------------LTYQVKQ-GDTLNSIAADFRISTAALLQANPSLQAGL-TAGQSIVIPGL-PDPYTIPYHIAVSIGAKTLTLSL-NNRV-KTYPIAVGKIL--TQTPTGEFYIINRQRN---------------------------PGGPFGAYWLSLSAAH--YGIHGTNNPASIGKAVSKGCIR-HNKDVIELASIVPNGTRVTINR------------------------------------------------------------------------------
7	HHPRED-g	1y7m_A	0.329	0.503	7.207	threading_7	--------------------------------------------LTYQVKQ-GDTLNSIAADFRISTAALLQANPSLQAGLT-AGQSIVIPG-LPDPYTIPYHIAVSIGAKTLTLSLNN-RV-KTYPIAVGKILTQ--TPTGEFYIINRQRN---------------------------PGGPFGAYWLSLSA--AHYGIHGTNNPASIGKAVSKGCIR-HNKDVIELASIVPNGTRVTINR------------------------------------------------------------------------------
8	SP3	1y7ma	0.342	0.503	3.143	threading_8	--------------------------------------------LTYQVKQ-GDTLNSIAADFRISTAALLQANPSLQAGLT-AGQSIVIP-GLPDPYTIPYHIAVSIGAKTLTLSLNN--RVKTYPIAVGKIL--TQTPTGEFYIINRQRN---------------------------PGGPFGAYWLSLSAAH--YGIHGTNNPASIGKAVSKGCIRH-NKDVIELASIVPNGTRVTINR------------------------------------------------------------------------------
9	SAM-T99	1y7mA	0.321	0.497	5.473	threading_9	--------------------------------------------LTYQVKQ-GDTLNSIAADFRISTAALLQANPSLQAGLTAG--QSIVIPGLPDPYTIPYHIAVSIGAKTLTLS--LNNRVKTYPIAVGKILTQ--TPTGEFYIINRQRNP---------------------------GGPFGAYWLSL--SAAHYGIHGTNNPASIGKAVSKGCIR-HNKDVIELASIVPNGTRVTI--------------------------------------------------------------------------------
10	MUSTER	1zatA	0.190	0.659	0.981	threading_10	---KEQLASMNAIANVKATYSING----ETFQIPSSMSWLTYNDGKVDLDTERQYVTDLGTKYNTSWTQTDSETEALKKAILAGQDFTRSPTTADHPLIEDTYIEVDLENQHMWYYK-DGKVALETDIVSGKPT--TPTPAGVFYVWNKEEDATLKGTNG-----------------TPYESPVN-YWMPIDWTG--VGIHDSDWQPEYGGRGSHGCINTPPSVMKELFGMVEKGTPVLVF-------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.740 to 1y7mA SCOP code=b.160.1.1	TM-score=0.617 to 1sezA SCOP code=c.3.1.2	TM-score=0.742 to 1y7mA SCOP code=b.160.1.1	TM-score=0.738 to 1y7mA SCOP code=b.160.1.1	TM-score=0.678 to 1zatA SCOP code=b.160.1.1