Template-based Modeling Results for YCEG_ECOLI

Submitted Primary Sequence

>Length 340
MKKVLLIILLLLVVLGIAAGVGVWKVRHLADSKLLIKEETIFTLKPGTGRLALGEQLYADKIINRPRVFQWLLRIEPDLSHFKAGTYRFTPQMTVREMLKLLESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKETAVASERDKVASVFINRLRIGMRLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKNAQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKVLLIILLLLVVLGIAAGVGVWKVRHLADSKLLIKEETIFTLKPGTGRLALGEQLYADKIINRPRVFQWLLRIEPDLSHFKAGTYRFTPQMTVREMLKLLESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKETAVASERDKVASVFINRLRIGMRLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKNAQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKVLLIILLLLVVLGIAAGVGVWKVRHLADSKLLIKEETIFTLKPGTGRLALGEQLYADKIINRPRVFQWLLRIEPDLSHFKAGTYRFTPQMTVREMLKLLESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKETAVASERDKVASVFINRLRIGMRLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKNAQ
4220011000000000000000011012113241223321002023221121002102424113213001000212332230300102022311021002012113322010100211202100210341321332101220110032132322310101011100101232212100220022013002210212043132321210010000023312222222100100012022214010001001002332313013110322111001202101201000000300200021241100000011311000111021013003201421443444
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKKVLLIILLLLVVLGIAAGVGVWKVRHLADSKLLIKEETIFTLKPGTGRLALGEQLYADKIINRPRVFQWLLRIEPDLSHFKAGTYRFTPQMTVREMLKLLESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKETAVASERDKVASVFINRLRIGMRLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKNAQ
1	MUSTER	2r1fA	0.885	0.741	2.551	threading_1	--------------------------------------------------------------------------------HFKAGTYRFTPQTV--RELKLLESGKEAQFPLRLVEGR-LSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTWYT-ANTTDVALLKRAHKKVKAVDSAWEGR-ADGLPYKD-KNQLVTASIIEKETAVASERDQVASVFINRLRIGR-LQTDPTVIYGGER-YNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKNAQ
2	PROSPECT2	1xpqA	0.104	0.994	1.281	threading_2	PAKKIAGLKAASTLHPLFLEEAQLSLNDGRTRFVFDDDNFIYIDEERLLLEIVDNEMSKHLGVSDCSFFQLVMKYAKDTYFGHQGRNAFALNY--DSVVQRIAQSPSKNVTVNCEDGTVQSVLNLSVQPEKNLRGRIEKPVIQDAFDKIHFGALEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLERTSVTCWSQPLFFVNLSKSLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPVDMVVAMSNGQDSRIRFATIMDGAGCAYGAWESGRREATRISDLLKLEHHH
3	PROSPECT2	2wnhA	0.092	0.891	1.214	threading_3	TAGNREAIEAATHGYAAVVNKGREEGQHYRQLGLLQAESIYVRASPLQRTRATAQAL-------------VDGAFPGCGVAIHYANGDADPLFQTDKFAAT---------------QTDPARQLAAVKEKAGDLAQRRQAPTIQLLKQAVCQADKPCPIFDTPWRVEQSKSSGLSVMANMVETLRLGWSENLPLSQLAWGKIAQASQITALLPLLTENYDLSNDVLYTAQKMLDGVKPEASPNVRDTNIAMV---------RTLMNFSWQLPGYSRGNIPPGSQAQGLDDLRRLQTPDAQHPMLRQEWRQPGCRQTDVGFQAAITALGQRIDRPSAPVLP
4	SPARKS	2r1fa	0.964	0.741	2.595	threading_4	--------------------------------------------------------------------------------HFKAGTYRFTPQTV--RELKLLESGKEAQFPLRLVEG-RLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTWY-TANTTDVALLKRAHKKV-KAVDSAWEGRADGLPYKDKNQLV-TASIIEKETAVASERDQVASVFINRLRIGR-LQTDPTVIYG-GERYNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKNAQ
5	PROSPECT2	2r1fA	0.925	0.741	3.824	threading_5	--------------------------------------------------------------------------------HFKAGTYRFTPQTV--RELKLLESGKEAQFPLRLVEGR-LSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTW-YTANTTDVALLKRAHKKVKA-VDSAWEGRADGLPYKD-KNQLVTASIIEKETAVASERDQVASVFINRLRIGR-LQTDPTVIYGGER-YNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKNAQ
6	PPA-I	2r1fA	0.885	0.741	3.635	threading_6	--------------------------------------------------------------------------------HFKAGTYRFTPQTV--RELKLLESGKEAQFPLRLVEGR-LSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTWYT-ANTTDVALLKRAHKKVKAVDSAWEGR-ADGLPYKD-KNQLVTASIIEKETAVASERDQVASVFINRLRIGR-LQTDPTVIYGGER-YNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKNAQ
7	HHPRED-l	2r1f_A	0.996	0.738	12.405	threading_7	--------------------------------------------------------------------------------HFKAGTYRFTPQ-TVRE-LKLLESGKEAQFPLRLVEG-RLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTW-YTANTTDVALLKRAHKK-VKAVDSAWEGRADGLPYKDKNQLVT-ASIIEKETAVASERDQVASVFINRLRIG-RLQTDPTVIYG-GERYNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKNA-
8	HHPRED-g	2r1f_A	0.996	0.741	10.744	threading_8	--------------------------------------------------------------------------------HFKAGTYRFTPQ-TVRE-LKLLESGKEAQFPLRLVEG-RLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTW-YTANTTDVALLKRAHKK-VKAVDSAWEGRADGLPYKDKNQLVT-ASIIEKETAVASERDQVASVFINRLRIG-RLQTDPTVIYG-GERYNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKNAQ
9	SP3	2r1fa	0.925	0.741	1.360	threading_9	--------------------------------------------------------------------------------HFKAGTYRFTPQTV--RELKLLESGKEAQFPLRLVEGR-LSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTWYT-ANTTDVALLKRAHKKV-KAVDSAWEGRADGLPYKD-KNQLVTASIIEKETAVASERDQVASVFINRLRIGR-LQTDPTVIYGGER-YNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKNAQ
10	SAM-T99	2r1fA	0.960	0.741	7.437	threading_10	--------------------------------------------------------------------------------HFKAGTYRFTPQTVRE--LKLLESGKEAQFPLRLVEG-RLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDT-WYTANTTDVALLKRAHKKV-KAVDSAWEGRADGLPYKDKNQLVT-ASIIEKETAVASERDQVASVFINRLRIG-RLQTDPTVIYGGER-YNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKNAQ

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.359 to 1rh4A TM-score=0.932 to native SCOP code=k.17.1.1	TM-score=0.472 to 1b5qB TM-score=0.238 to native SCOP code=c.3.1.2	TM-score=0.347 to 1jb0J TM-score=0.945 to native SCOP code=f.23.18.1	TM-score=0.633 to 1dkpA TM-score=0.276 to native SCOP code=c.60.1.2	TM-score=0.348 to 2r2vA TM-score=0.939 to native SCOP code=h.1.3.1

Experimental Structure

Download 2r1fA

SCOP code=k.17.1.1