Template-based Modeling Results for YCEB_ECOLI

Submitted Primary Sequence

>Length 186
MNKFLFAAALIVSGLLVGCNQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALPVFDKEKGAIFLKEMEVVDATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGSQGEAMAKKLAKGIEVKPGEIVIPFTD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNKFLFAAALIVSGLLVGCNQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALPVFDKEKGAIFLKEMEVVDATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGSQGEAMAKKLAKGIEVKPGEIVIPFTD
CCHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHCCHHEEECCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEEEEECCCCCCEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCEEECCEEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNKFLFAAALIVSGLLVGCNQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALPVFDKEKGAIFLKEMEVVDATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGSQGEAMAKKLAKGIEVKPGEIVIPFTD
422111000000000011023122110123102300232131121112210020100012121311333321010101010102021121302020202000011443110002301011021223302300220021012001200331100102332121110023013202022010102135
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNKFLFAAALIVSGLLVGCNQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALPVFDKEKGAIFLKEMEVVDATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGSQGEAMAKKLAKGIEVKPGEIVIPFTD
1	MUSTER	3l6iB	0.894	0.860	3.047	threading_1	-------------------NQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDN--SLFGSQKATKLKLKALPVFDKEKGAIFLKEE-VVDATVQPEK--QTVQTLLPYLNQALRNYFNQQPAYVLREDGSQ-GEAAKKLAKGIEVKPGEIVIPFT-
2	SPARKS	3l6ia	0.872	0.882	4.801	threading_2	---------------HHSHNQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLD--NSLFGSQKATKLKLKALPVFDKEKGAIFLKE-EVVDATVQPE--KQTVQTLLPYLNQALRNYFNQQPAYVLREDGSQ-GEAAKKLAKGIEVKPGEIVIPFT-
3	PROSPECT2	3eyrA	0.864	0.871	2.796	threading_3	SH-----------------NQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANL--DNSLFGSQKATKLKLKALPVFDKEKGAIFLKEEVV-DATVQPEK--QTVQTLLPYLNQALRNYFNQQPAYVLREDGSQ-GEAAKKLAKGIEVKPGEIVIPF-T
4	PPA-I	3l6iB	0.867	0.887	6.918	threading_4	--------------HHHSHNQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDN--SLFGSQKATKLKLKALPVFDKEKGAIFLKEE-VVDATVQPEK--QTVQTLLPYLNQALRNYFNQQPAYVLREDGSQ-GEAAKKLAKGIEVKPGEIVIPFT-
5	HHPRED-l	3eyr_A	0.988	0.871	10.317	threading_5	----------------SH-NQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLD-NSLFGSQKAT-KLKLKALPVFDKEKGAIFLKE-EVVDATVQPEK-QTV-QTLLPYLNQALRNYFNQQPAYVLREDGSQGEA-AKKLAKGIEVKPGEIVIPFT-
6	HHPRED-g	3eyr_A	0.988	0.871	9.120	threading_6	----------------SH-NQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLD-NSLFGSQKAT-KLKLKALPVFDKEKGAIFLKE-EVVDATVQPEK-QTV-QTLLPYLNQALRNYFNQQPAYVLREDGSQGEA-AKKLAKGIEVKPGEIVIPFT-
7	SP3	3l6ia	0.872	0.882	4.784	threading_7	---------------HHSHNQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLD--NSLFGSQKATKLKLKALPVFDKEKGAIFLKE-EVVDATVQPE--KQTVQTLLPYLNQALRNYFNQQPAYVLREDGSQ-GEAAKKLAKGIEVKPGEIVIPFT-
8	SAM-T99	3l6iB	0.881	0.855	6.438	threading_8	-------------------NQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDAN--LDNSLFGSQKATKLKLKALPVFDKEKGAIFLKE-EVVDATVQPE--KQTVQTLLPYLNQALRNYFNQQPAYVLREDGSQ-GEAAKKLAKGIEVKPGEIVIPF--
9	MUSTER	3e8wA	0.187	0.892	0.682	threading_9	SACMTSAFQQALPTFVAGLPDLDDFAFDLSGLQFTL-------KEGKLKGLKGA--VIDNVKWDL---KKKNIEVDFHLDATVKILILPITIHIHLVVSYEMEKDA-EGVDHV---IFKKYTVTKDNAQFGLTNLFKELSDTMLTFLNQNWKQVSEEGKPVMEAAAKKIFKNI----KHFKVPIAE
10	SPARKS	3eyra	0.889	0.871	4.666	threading_10	-----------------SHNQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDNS--LFGSQKATKLKLKALPVFDKEKGAIFLKE-EVVDATVQPEK--QTVQTLLPYLNQALRNYFNQQPAYVLREDGSQ-GEAAKKLAKGIEVKPGEIVIPFT-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.541 to 1usvF TM-score=0.942 to native SCOP code=d.83.2.1	TM-score=0.546 to 1usvF TM-score=0.950 to native SCOP code=d.83.2.1	TM-score=0.546 to 1usvF TM-score=0.988 to native SCOP code=d.83.2.1	TM-score=0.543 to 1usvF TM-score=0.982 to native SCOP code=d.83.2.1	TM-score=0.542 to 1usvF TM-score=0.943 to native SCOP code=d.83.2.1

Experimental Structure

Download 3l6iA

SCOP code=d.83.2.1