Template-based Modeling Results for YCDY_ECOLI

Submitted Primary Sequence

>Length 184
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDELLTRLQKSCDMTQVSADYNALFIGDECAVPPYRSAWVEGATEAEVRAFLSERGMPLADTPADHIGTLLLAASWLEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFWRTMAPLTRDAISAMWDELEEDSEE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDELLTRLQKSCDMTQVSADYNALFIGDECAVPPYRSAWVEGATEAEVRAFLSERGMPLADTPADHIGTLLLAASWLEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFWRTMAPLTRDAISAMWDELEEDSEE
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDELLTRLQKSCDMTQVSADYNALFIGDECAVPPYRSAWVEGATEAEVRAFLSERGMPLADTPADHIGTLLLAASWLEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFWRTMAPLTRDAISAMWDELEEDSEE
4311110020000001231233101200210331322121213122001202421322200110000011330200111001132221110120023110322421110000001000102321233122002100120001001200110221120200200010021002101321333344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQDELLTRLQKSCDMTQVSADYNALFIGDECAVPPYRSAWVEGATEAEVRAFLSERGMPLADTPADHIGTLLLAASWLEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFWRTMAPLTRDAISAMWDELEEDSEE
1	MUSTER	3efpB	0.276	0.984	2.329	threading_1	QDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPSLAPLVTAFQTQCEETHAQAWQRLFVGPALPSPPWGSVWLDGDSTLALRQWMREKGIQFENEPEDHFGSLLLMAAWLAENGR---QTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAV
2	SPARKS	1s9ua	0.288	0.962	4.152	threading_2	RDEFAVTARVLGALFYYSPESHETAPLVQALLNDDWQAQWPLDAEALAPVAAKTHSEESLPQAWQRLFIGPALPSPPWGSVWLDGDSTLALRQWRENG----IQEPEDHFGSLLLLAAWLAENDR---HHECEQLLAWHLFPWSSRFLDVFIDHAGHPFYQALGQLARLTLAQWQAQLIIPVAV
3	PROSPECT2	1s9uA	0.276	0.984	2.178	threading_3	RDEFAVTARVLGALFYYSPESHETAPLVQALLNDDWQAQWPLDAEALAPVAFKTHSEESLPQAWQRLFIGPALPSPPWGSVWLDRESVLDSTLALRQWRENGIQEPEDHFGSLLLLAAWLAENDRH---HECEQLLAWHLFPWSSRFLDVFIDHAGHPFYQALGQLARLTLAQWQAQLIIPVAV
4	PPA-I	3efpB	0.271	0.984	2.471	threading_4	QDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPSLAPLVTAFQTQCEETHAQAWQRLFVGPALPSPPWGSVWLDRESTLALRQWMREKGIQFENEPEDHFGSLLLMAAWLAENGR---QTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAV
5	HHPRED-l	1s9u_A	0.297	0.951	7.153	threading_5	RDEFAVTARVLGALFYYSPESHETAPLVQALLNDDWQAQWPLDAEAPVAA-FKTHSEESLPQAWQRLFIGPALPSPPWGSVWLDGDSTLALRQW-RENGIQ---EPEDHFGSLLLLAAWLAENDR---HHECEQLLAWHLFPWSSRFLDVFIDHAGHPFYQALGQLARLTLAQWQAQLIIPVA-
6	HHPRED-g	1s9u_A	0.295	0.957	6.377	threading_6	RDEFAVTARVLGALFYYSPESHETAPLVQALLNDDWQAQWPLDALAPVAA-FKTHSEESLPQAWQRLFIGYALPSPPWGSVWLDGDSTLALRQW-RENGIQ---EPEDHFGSLLLLAAWLAEND---RHHECEQLLAWHLFPWSSRFLDVFIDHAGHPFYQALGQLARLTLAQWQAQLIIPVAV
7	SP3	1s9ua	0.288	0.962	4.443	threading_7	RDEFAVTARVLGALFYYSPESHETAPLVQALLNDDWQAQWPLDAEALAPVAAKTHSEESLPQAWQRLFIGPALPSPPWGSVWLDGDSTLALRQWRENG----IQEPEDHFGSLLLLAAWLAENDR---HHECEQLLAWHLFPWSSRFLDVFIDHAGHPFYQALGQLARLTLAQWQAQLIIPVAV
8	SAM-T99	3efpB	0.290	0.957	5.182	threading_8	-DNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLLVTAFQTQCEETHAQAWQRLFVGPWLPSPPWGSVWLFGDSTLALRQWMREKGIQFQNEPEDHFGSLLLMAAWLAEN---GRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLI----
9	MUSTER	1n1cA	0.169	0.967	1.793	threading_9	INARALVYQLLSSLFAREVDSEAAQQFWEQLSLEANFTQSVDKIRSTLNGIKDDEALLELAADYCGLFLVGT-SASPYASLYLLFGEQHQQSEFLHQSKLQVQPEPADHLAVLAYAHLCCHSE-----NSVQLSFLQTCVNSWLAKFINHLTQCNKNGFYSAVATLTLAWVKQDIAQLEPAVAI
10	SPARKS	1n1ca	0.163	0.967	3.262	threading_10	NPARALVYQLLSSLFAREVDSEAAQQFWEQLSLEANFTQSVDKIRSTLNGIKDDEALLELAADYCGLFLVGT-SASPYASLYLLFGEQHQQSEFLHQSKLQVQPEPADHLAVLA-----YAHLCCHSENSVQLSFLQTCVNSWLAKFINHLTQCNKNGFYSAVATLTLAWVKQDIAQLEPAVAI

Predicted Tertiary Structure


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TM-score=0.681 to 2o9xA SCOP code=a.184.1.1	TM-score=0.684 to 2o9xA SCOP code=a.184.1.1	TM-score=0.670 to 2o9xA SCOP code=a.184.1.1	TM-score=0.676 to 2o9xA SCOP code=a.184.1.1	TM-score=0.680 to 2o9xA SCOP code=a.184.1.1