Template-based Modeling Results for YCDU_ECOLI

Submitted Primary Sequence

>Length 328
MIPDYLTFIRFQDKRNLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIFDLKAYWAYKCVTKNIDFSWFKKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQLLPSLYALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYKSLTRYVLLSVCISTVVNLLTISPLRNSDSFVTEGQWLTFKSIIALLILCGVVLAINLFFLRFSKRYAFLGRLFLQEIDLFFSSENALSTFFAKPLWLRLFILLVIEVMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIYYFFYCRFLWHNDFMMACDMYFRWGHFNK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIPDYLTFIRFQDKRNLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIFDLKAYWAYKCVTKNIDFSWFKKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQLLPSLYALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYKSLTRYVLLSVCISTVVNLLTISPLRNSDSFVTEGQWLTFKSIIALLILCGVVLAINLFFLRFSKRYAFLGRLFLQEIDLFFSSENALSTFFAKPLWLRLFILLVIEVMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIYYFFYCRFLWHNDFMMACDMYFRWGHFNK
CCCCCEEEEEECCCCCEEEEHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEHEEECCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIPDYLTFIRFQDKRNLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIFDLKAYWAYKCVTKNIDFSWFKKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQLLPSLYALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYKSLTRYVLLSVCISTVVNLLTISPLRNSDSFVTEGQWLTFKSIIALLILCGVVLAINLFFLRFSKRYAFLGRLFLQEIDLFFSSENALSTFFAKPLWLRLFILLVIEVMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIYYFFYCRFLWHNDFMMACDMYFRWGHFNK
5343101002022332000000000000000021021202211000000000000010000010000010013201121125331120000011100000000000000010002111200110001100211000002101210022001211431313101100000000000020010120321310002230010100000000000000011001202310010020002101110223110010101001121001000110101001000000102100100000000000000000000100010000010002122235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIPDYLTFIRFQDKRNLIYIYAIGLILIGFYWKNAGFTFPSEDIGVVSGILALVLYNFIFDLKAYWAYKCVTKNIDFSWFKKKQNHKIELFLTQPLVAGFLSLIMLSAMSWGLYQLLPSLYALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYKSLTRYVLLSVCISTVVNLLTISPLRNSDSFVTEGQWLTFKSIIALLILCGVVLAINLFFLRFSKRYAFLGRLFLQEIDLFFSSENALSTFFAKPLWLRLFILLVIEVMWITLVSVLATLVEWRIWFEAYFLLCYVPCLIYYFFYCRFLWHNDFMMACDMYFRWGHFNK
1	PROSPECT2	3a0oA3	0.055	0.893	1.584	threading_1	GAQT----------------------------SHPRLWLNSEQLSAFADAVAKDNHCGWAEFYEKSVEPWLERPVMPEPQPYPNNTRVATLWRQMYIDCQEVIYAIRHLAIAGRVLGRDDLLDASRKWLTSRAYNDEAGFRVVVALAWGYDWLYDHLDERRTVRSVLLERTREVADHVIAHARIHVFPYD-------SHAVRSLSAVLTPACIALQGESDEAGEWLDYTVEFLATLYSPWAGTDGGWAEGPHYWMTGMAYLIEAANLIRSYIGYDLYQRPFFQNTGRFPLYLKLGYNVRQFAGVTNYGWWDLNFDDLVYRHDYPQVEA
2	HHPRED-g	3bz1_y	0.286	0.085	1.001	threading_2	--------------------------------------------------------------------------------------------------------------------IAQLTMIAMIGIAGPMIIFLLAVRRGNL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	3kb9A	0.088	0.939	1.574	threading_3	AVPPSLRLLLEKRLMPADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHAGAWRRLRGLLHTALDSPGDHLHHEDTLVAGFADS-----VRRLYAFLPATWNARFARHF---------HTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITH------HSLTLEEAIGEVRRRVEECITEFLAVERDALRFADELADGTVRGKELSAVRANVGNMRNWFSSVYWFHHEMVDSWDDRSTPPYVNN
4	PROSPECT2	3a6pA1	0.090	0.982	1.557	threading_4	AMCPICVPCGLEKTQVAIVRHFGLQILEHVLIANGTLNILEEENHIKDALSRIVVEMIKREETQTELVMFILLRLAEDVVTFQTLPSFLLNTLQENVNKYQQVCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLQLGAAECLLIAVSRKGKLEDRKPLMVLDVAMHYILSAAQTADGGGLVE-----KHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALIIPKYLRASMTNLCEYSRFDFDSDEDFNAFF-NSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTF
5	PROSPECT2	1jdha	0.085	1.000	1.489	threading_5	AVVNVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMTLHNLLLHAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLLVQNCLWTLRNLSDAATKQEGMEGLLGTLVVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAITEPAICALRHLTSRHQEAEMAQNAVRLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDMEEIVEGCTGALHILARDVHNRIVIRGLNQLLYSPIENS
6	PROSPECT2	1ejlI	0.103	0.976	1.487	threading_6	SVEDIVKGINSNNLESQLQATQAARKLL-----SREKQPPIDNIIRAGLIPKFVSFCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILVLADSCWAISYLTDGPNERIEMVVKKGV---VPQLVKLPIVTPALRAIGNIVTGTDEQTQKVIDAALAVFPSLLTNPKTNIQKEATWTMSNIQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTLDAISNIFQAAEKLGETEKLSIMIEECGGYFS
7	MUSTER	3zuxA	0.145	0.820	0.637	threading_7	IL---SKISSFIGK--TFSLWAALFAAAAFFA--DTFKAGP----YIPWLLGIIMFGMGLTLK--------PS--DFDILFK---HPKV-----VIIGVIAQFAIMPATAWCLSKLLEIAVGVILVGCCGGTASNVMTYLARGN---------------------VALSVAVTSVSTLTSPTPA-----LMLAGEMLAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGAGKIMESGLLIFAVVVLHNGIGYLLGFFAAKALTIEVGSGLAAALAAAHF-AVPGALFSVWHNISGSLL-YWA--AK
8	SPARKS	2xwub	0.135	0.951	0.633	threading_8	LGAELLSNLRLLTSYSWQHLYGFQSI--------AE-TIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGAL-SEWLADHPVM-INSVL--PLVLHALGNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLSQCMWLMQALGFLLSALQVEEILKNLHSLISPIQQLEKLAEEIPNPSNKLAIV-HILLFTTLPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSIPQASALDLTRQLVHIPAHFPPIEALFLLVTSVTLTLFQQGPRPDIVDSFMQLLAQALK--RKPD
9	PROSPECT2	1ee4a	0.119	0.948	1.471	threading_9	NSDDMRQILSREHRPPIDVVIQAGVVLVEFMRENQPASGTSADADAVPLFIQLLLGNVAGDSTDYRDYVLQCNAMELSNLCRGKKPQPDWSVVSQALPTLAKLETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVETLVQTPALRAVGNIVTGN---DLQTQVVINAGVLPALRLLLSSPKEN-----------IKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTK---KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK
10	PPA-I	3rzeA1	0.112	0.762	0.892	threading_10	-------------------------------------------MPLVVVLSTICLVTVGLNLLVLYAVRSE-----------RKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLHRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRH-----------------MNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLIYPLCN--ENFKKTFKRILHI-----

Predicted Tertiary Structure


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TM-score=0.422 to 1pv3A SCOP code=a.24.14.1	TM-score=0.549 to 1nc5A SCOP code=a.102.1.6	TM-score=0.324 to 1hofA SCOP code=j.94.1.1	TM-score=0.744 to 1hm7B SCOP code=a.128.1.4	TM-score=0.600 to 1xqrA SCOP code=a.118.1.21