Template-based Modeling Results for YCDT_ECOLI

Submitted Primary Sequence

>Length 452
MEKDYLRISSTVLVSLLFGLALVLVNSWFNQPGVEEVVPRSTYLMVMIALFFIDTVAFIFMQLYFIYDRRQFSNCVLSLAFLSCLIYFVITVIIIQQIIEERLTSSVVQNDIAIYYLFRQMSLCILIFLALVNKVSENTKQRNLFSKKMTLCISLFFVFGGPIVAHILSSHYESYNLHIAELTNENGQVVWKASYVTIMIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVVSKLTVMVIFMCHIFSALRVTKNIAHRDPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVVVRDVVNFCESP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MEKDYLRISSTVLVSLLFGLALVLVNSWFNQPGVEEVVPRSTYLMVMIALFFIDTVAFIFMQLYFIYDRRQFSNCVLSLAFLSCLIYFVITVIIIQQIIEERLTSSVVQNDIAIYYLFRQMSLCILIFLALVNKVSENTKQRNLFSKKMTLCISLFFVFGGPIVAHILSSHYESYNLHIAELTNENGQVVWKASYVTIMIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVVSKLTVMVIFMCHIFSALRVTKNIAHRDPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVVVRDVVNFCESP
CCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MEKDYLRISSTVLVSLLFGLALVLVNSWFNQPGVEEVVPRSTYLMVMIALFFIDTVAFIFMQLYFIYDRRQFSNCVLSLAFLSCLIYFVITVIIIQQIIEERLTSSVVQNDIAIYYLFRQMSLCILIFLALVNKVSENTKQRNLFSKKMTLCISLFFVFGGPIVAHILSSHYESYNLHIAELTNENGQVVWKASYVTIMIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVVSKLTVMVIFMCHIFSALRVTKNIAHRDPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVVVRDVVNFCESP
55422121211000000000000000011232223311120210000000000000000001100211231012000000010000000000000021013211010131010000000100000000000002203323332222331100000000000000010002113200010021023202010200000000000000000001010110000000000000000000000011322122100120020002001001101201201210121122130120101110121011101223521000000002002201011001000100210030005102331000101111000001302232021002200310340203133221222000000000023322202200200030012023322200001222321439
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MEKDYLRISSTVLVSLLFGLALVLVNSWFNQPGVEEVVPRSTYLMVMIALFFIDTVAFIFMQLYFIYDRRQFSNCVLSLAFLSCLIYFVITVIIIQQIIEERLTSSVVQNDIAIYYLFRQMSLCILIFLALVNKVSENTKQRNLFSKKMTLCISLFFVFGGPIVAHILSSHYESYNLHIAELTNENGQVVWKASYVTIMIFMWLTLLSVNLYFNGLRYDIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVVSKLTVMVIFMCHIFSALRVTKNIAHRDPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVVVRDVVNFCESP
1	MUSTER	2v0nA	0.192	0.931	1.802	threading_1	LLEAKLTAEYYEVSTAGPTALAMAARDLPD----DVMMPGMDGFTVCRKLKDDPTTRHIPV---LITALDGRGDRIQGLESGASDF------------LTKPIDDVMLFA-RVRSLTRFKLVIDELRQREASGRVIAGAAARLDGLGGRVLIVD---ERQAQRVAAELGVEH----RPVIESDPEKAKISAGGPVDLVIVNAGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGK----AAHHH
2	SPARKS	3brea	0.221	0.681	4.969	threading_2	-----------------------------------------------------------------------------------------------------AVMVLLVDDQAMIGEAVRRS-------LAIDFHFCSDPQQAVANQIKPTVIL--------------QDLVMPGVDLTLLAAYRGNP----ATRDIPIIVLSTKPTVKSAAFAAGANDYLVKLPD-----------AIELVARIRYHSRSYIALQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLGGGGQTFRVLIEMADQALYQAKNNGRNQVGLMEQ-------
3	PROSPECT2	1w25A	0.197	0.898	3.514	threading_3	EYYEVSTAMDGPALAMAARDGFTVCRKLKDDPTTRHIPVALDGRGDRIQGLESGASDFLTKP----IDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVL---IVDDNERQAQRVAAELGVEHRPVIESD--------------PEKAKISAGGPVDLVIVNAAAKNFD-------------------GLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGK------AAH
4	PPA-I	3i5cB	0.301	0.427	2.695	threading_4	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RMKQLEDKVEELLSKNYHLENEVARLKKLVNSDGLTGLSNRRHFDEYLEMEWRRSLQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLGGGGQTFRVLIEMADQALYQAKNNGRNQVGLMEQ-------
5	HHPRED-l	1w25_A	0.220	0.843	6.270	threading_5	EYYEVSTAMD-----GPTALAM--AAR--DLPDIILLDVMMPGMDGFTVCRKLRIQGLSGASDFLPIDDVMLFARVRSLT---RFKLVIDELRQRGARLDGLGGRVLIVDD-NE----RQAQRV----AAELGVEHR-----------PV--IESD-----PEKAKISAGGP--VDLVIVNAAAKN----FDGL---------R---FTAALRSRTRQPDDRGRMVKA--------LEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKAAH------
6	HHPRED-g	1w25_A	0.207	0.865	5.565	threading_6	EYYEVSTAMDG-----PTALA--MAAR--DLPDIILLDVMMPGMDGFTVCRKLRGDRIQGLESDFLIDDVMLFARVRSLTRF---KLVIDELRQREARLDG-LGGRVLIVDDNERQAQR----VAAELGVEHRPVIESDPE----------------------KAKIS-AGG-PVDLVIVNAAAKN----FD-G--------LRFTAALR-SEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKTLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKAAH------
7	SP3	1w25a	0.197	0.956	3.860	threading_7	---------SARI--LVVANVRLLEAKLTAEYYEVSTAMD---GPTALAMAARDLPDIILLDVMMPMDGFTVCRKLKDDPTTRHIPVVLITRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRGAAARLDGLGGRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAADGLRFTAALRSEERTRQLPVLAMVDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRAGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKAAH------
8	SAM-T99	2v0nA	0.243	0.646	5.248	threading_8	-----------------------------------------------------------------------------------------------------------------------------------------------------SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRQRKRYTDYLRELAVTDQLTGLHNRRYMTGQLDSLRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVV-----------
9	MUSTER	3breB	0.242	0.659	1.603	threading_9	----------------------------------------------------------------------------------------------------------------------------------------------APLDGAVMVLLV---AMIGEAVRRSLASEA-GIDFHFCSDPQQAVAVANQIKPTVILQDL-GLTLLAAYRGNPATRDI-VKSAAFAAGANDYLVAIELVARIRYHSRSYIALQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLVPGGQTFRVLIEMADQALYQAKNNGRNQVGLM------EQP
10	SPARKS	3i5aa	0.219	0.646	4.933	threading_10	--------------------------------------------------------------------------------------------------------------------------------------------------SAMVL-----LVDDQAMIGEAVRRGHESIDFHFCADPHQAIAQAVQIKPTVILQDLVMPGLDGLTLVREYRNPLTRDIPIIVLSTKEDPLIKSAAFAAGANSRSYMTLLQRDEAYRALRVSQQQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRATQAQLSLLMIDVDYFKAYNDNFGHLEGDEALRQVAKAIRNSCRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHIAPVPGSSLTVSIGVATVPQVGQHSRQLILDADKGLYLAKNNGRNQVAAG---------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.900 to 2v0nA SCOP code=c.23.1.1	TM-score=0.715 to 2v0nA SCOP code=c.23.1.1	TM-score=0.603 to 2v0nA SCOP code=c.23.1.1	TM-score=0.652 to 2v0nA SCOP code=c.23.1.1	TM-score=0.601 to 2v0nA SCOP code=c.23.1.1