Template-based Modeling Results for YCDO_ECOLI

Submitted Primary Sequence

>Length 375
MTINFRRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPMTITVNAGKTQFIIQNHSQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMTCGLLTNPKGKLIVKGEATADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDAIKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHRLEKALFGDNTTKGMDQYAEQLYTDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANVEGSQKIVDLLRPQLQKANPELLAKVDANFKKVDTILAKYRTKDGFETYDKLTDADRNALKGPITALAEDLAQLRGVLGLD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTINFRRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPMTITVNAGKTQFIIQNHSQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMTCGLLTNPKGKLIVKGEATADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDAIKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHRLEKALFGDNTTKGMDQYAEQLYTDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANVEGSQKIVDLLRPQLQKANPELLAKVDANFKKVDTILAKYRTKDGFETYDKLTDADRNALKGPITALAEDLAQLRGVLGLD
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTINFRRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPMTITVNAGKTQFIIQNHSQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMTCGLLTNPKGKLIVKGEATADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDAIKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHRLEKALFGDNTTKGMDQYAEQLYTDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANVEGSQKIVDLLRPQLQKANPELLAKVDANFKKVDTILAKYRTKDGFETYDKLTDADRNALKGPITALAEDLAQLRGVLGLD
432211210100000000101122312323202010124302122220310201020212244201010022110011212013212220002023020100003223331322232322232232322210110021012101210220131021013014223132012001201201130220030022000101123221333222340100010010002332231023003201310220142024121202200100000022002131223323113010110200020013002102210241133002301210330130013133432131133023211200221021002101303211324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTINFRRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPMTITVNAGKTQFIIQNHSQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMTCGLLTNPKGKLIVKGEATADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDAIKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHRLEKALFGDNTTKGMDQYAEQLYTDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANVEGSQKIVDLLRPQLQKANPELLAKVDANFKKVDTILAKYRTKDGFETYDKLTDADRNALKGPITALAEDLAQLRGVLGLD
1	MUSTER	3at7A	0.614	0.664	2.579	threading_1	------------------------------------------------------------------------------------------------------------------------------VAPLDLVQPISDYKIYVSENLQTLVRDTREFTNAVKAGDVAKAKKLFASTRMSYERIEPIAELFSDLDASIDSRADDHEKAEKDPAFFGFHRIEYGLFAQNSAKGLAPVADKLMADVLELQKRIRGLTFPPEKVVGGAAVLMEEVAATKISGEEDRYSHTDLWDFQANFEGAKKIVDLFRPLVVKDNRAFADKVDANFDTVFKTLAKYRTADGFELYGKLSERDRKVLAGRVNTLAEDLSKMRGLLGLD
2	PROSPECT2	1yt3A	0.109	0.907	1.456	threading_2	MNYQMTDDALASLCEAV---------RAFPAIALDTEFVRTRTYYPQDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGGELPQPLIDTQI----LAAFCGRPMSWGGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA------SGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACL-----QLLADWRLRKARERDLAVNFVVREEHLWSVARYMLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLM---DMPGYRKAFKAIKSLITDETHKISAELLASRRQINQLLNWHWKLKPQNNLPELSGWRGELMAEALHNLLQE--------YPQ
3	PROSPECT2	2pywA	0.106	0.859	1.376	threading_3	FEEFTSLVDYIKSTPALSSKIGADKSDDDLVIKE-------------VGDGNFVFIVVGSSG---SLVIKQALPYIRCIGESWPMTKEEVYHFDRTMALIGMRYLEPPHIILRKGLIAGIEYPF------------------LADHMSDYMAKT--LFFTSLLYHDTTEHRRAVTEFCGNVELCRLTEQVVFSDPYRVSTFNRWTSPYL-------DDDAKAVRED----------SALKLEIAELKSMFCERAQPMGFLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTWNLFNKRFIALTEVLKFVQENYMRNLLHDSLGFGKMIRRIVGVAHVEDFESIEEDKRRICERSALEFAKMLGEVVSAIQQQ
4	SPARKS	3at7a	0.614	0.664	5.368	threading_4	------------------------------------------------------------------------------------------------------------------------------VAPLDLVQPISDYKIYVSENLQTLVRDTREFTNAVKAGDVAKAKKLFASTRMSYERIEPIAELFSDLDASIDSRADDHEKAEKDPAFFGFHRIEYGLFAQNSAKGLAPVADKLMADVLELQKRIRGLTFPPEKVVGGAAVLMEEVAATKISGEEDRYSHTDLWDFQANFEGAKKIVDLFRPLVVKDNRAFADKVDANFDTVFKTLAKYRTADGFELYGKLSERDRKVLAGRVNTLAEDLSKMRGLLGLD
5	PROSPECT2	3at7A	0.610	0.664	3.671	threading_5	VA------------------------------------------------------------------------------------------------------------------------------PLDLVQPISDYKIYVSENLQTLVRDTREFTNAVKAGDVAKAKKLFASTRMSYERIEPIAELFSDLDASIDSRADDHEKAEKDPAFFGFHRIEYGLFAQNSAKGLAPVADKLMADVLELQKRIRGLTFPPEKVVGGAAVLMEEVAATKISGEEDRYSHTDLWDFQANFEGAKKIVDLFRPLVVKDNRAFADKVDANFDTVFKTLAKYRTADGFELYGKLSERDRKVLAGRVNTLAEDLSKMRGLLGLD
6	PPA-I	3at7A	0.614	0.664	4.443	threading_6	------------------------------------------------------------------------------------------------------------------------------VAPLDLVQPISDYKIYVSENLQTLVRDTREFTNAVKAGDVAKAKKLFASTRMSYERIEPIAELFSDLDASIDSRADDHEKAEKDPAFFGFHRIEYGLFAQNSAKGLAPVADKLMADVLELQKRIRGLTFPPEKVVGGAAVLMEEVAATKISGEEDRYSHTDLWDFQANFEGAKKIVDLFRPLVVKDNRAFADKVDANFDTVFKTLAKYRTADGFELYGKLSERDRKVLAGRVNTLAEDLSKMRGLLGLD
7	HHPRED-l	3at7_A	0.613	0.661	7.793	threading_7	------------------------------------------------------------------------------------------------------------------------------VAPLDLVQPISDYKIYVSENLQTLVRDTREFTNAVKAGDVAKAKKLFASTRMSYERIEPIAELFSDLDASIDSRADDHEKAEKDPAFFGFHRIEYGLFAQNSAKGLAPVADKLMADVLELQKRIRGLTFPPEKVVGGAAVLMEEVAATKISGEEDRYSHTDLWDFQANFEGAKKIVDLFRPLVVKDNRAFADKVDANFDTVFKTLAKYRTADGFELYGKLSERDRKVLAGRVNTLAEDLSKMRGLLGL-
8	HHPRED-g	3at7_A	0.614	0.664	8.617	threading_8	------------------------------------------------------------------------------------------------------------------------------VAPLDLVQPISDYKIYVSENLQTLVRDTREFTNAVKAGDVAKAKKLFASTRMSYERIEPIAELFSDLDASIDSRADDHEKAEKDPAFFGFHRIEYGLFAQNSAKGLAPVADKLMADVLELQKRIRGLTFPPEKVVGGAAVLMEEVAATKISGEEDRYSHTDLWDFQANFEGAKKIVDLFRPLVVKDNRAFADKVDANFDTVFKTLAKYRTADGFELYGKLSERDRKVLAGRVNTLAEDLSKMRGLLGLD
9	SP3	3at7a	0.614	0.664	5.115	threading_9	------------------------------------------------------------------------------------------------------------------------------VAPLDLVQPISDYKIYVSENLQTLVRDTREFTNAVKAGDVAKAKKLFASTRMSYERIEPIAELFSDLDASIDSRADDHEKAEKDPAFFGFHRIEYGLFAQNSAKGLAPVADKLMADVLELQKRIRGLTFPPEKVVGGAAVLMEEVAATKISGEEDRYSHTDLWDFQANFEGAKKIVDLFRPLVVKDNRAFADKVDANFDTVFKTLAKYRTADGFELYGKLSERDRKVLAGRVNTLAEDLSKMRGLLGLD
10	SAM-T99	3at7A	0.614	0.664	9.472	threading_10	------------------------------------------------------------------------------------------------------------------------------VAPLDLVQPISDYKIYVSENLQTLVRDTREFTNAVKAGDVAKAKKLFASTRMSYERIEPIAELFSDLDASIDSRADDHEKAEKDPAFFGFHRIEYGLFAQNSAKGLAPVADKLMADVLELQKRIRGLTFPPEKVVGGAAVLMEEVAATKISGEEDRYSHTDLWDFQANFEGAKKIVDLFRPLVVKDNRAFADKVDANFDTVFKTLAKYRTADGFELYGKLSERDRKVLAGRVNTLAEDLSKMRGLLGLD

Predicted Tertiary Structure


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TM-score=0.482 to 1tqgA SCOP code=a.24.10.3	TM-score=0.731 to 1yt3A SCOP code=a.60.8.3	TM-score=0.481 to 1tqgA SCOP code=a.24.10.3	TM-score=0.647 to 2pulA SCOP code=d.144.1.6	TM-score=0.482 to 1tqgA SCOP code=a.24.10.3