Template-based Modeling Results for YCCM_ECOLI

Submitted Primary Sequence

>Length 357
MAENKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQLLLLAMNIYIAITFWYWVRYYETASSTTFVARPGGIEGWLPIAGLMNLKYSLVTGQLPSVHAAAMLLLVAFIVISLLLKKAFCSWLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYLLLSFFIYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLSPFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAENKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQLLLLAMNIYIAITFWYWVRYYETASSTTFVARPGGIEGWLPIAGLMNLKYSLVTGQLPSVHAAAMLLLVAFIVISLLLKKAFCSWLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYLLLSFFIYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLSPFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHCCCCCEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAENKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQLLLLAMNIYIAITFWYWVRYYETASSTTFVARPGGIEGWLPIAGLMNLKYSLVTGQLPSVHAAAMLLLVAFIVISLLLKKAFCSWLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYLLLSFFIYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLSPFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH
553344332332112221411112111000011000000000000000000000111211100001121100200000000100110011011200000000000000000001410000000000000100010022122332212321312120010000000000000000100101111111000001001001100000000000000000001000021101100000112122212021223201201301310113020342231422000000000310222100112233222323221120100000000000000000110011312022200210022122234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAENKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQLLLLAMNIYIAITFWYWVRYYETASSTTFVARPGGIEGWLPIAGLMNLKYSLVTGQLPSVHAAAMLLLVAFIVISLLLKKAFCSWLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYLLLSFFIYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLSPFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH
1	SPARKS	1xer_	0.297	0.207	1.071	threading_1	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GIDPYGPVEPPVLGIHGTIVGVDFDLCIADGSCINACPVNTPGHPASEVNEQACIFCMACVNVCPVAA---IDVKPP--------------------------------------------------------
2	PROSPECT2	3a0oA3	0.066	0.843	1.600	threading_2	VEPWLERPVMPEPQPYPNNTRVATLWRQMYIDCQEVIYAIRHLAIAGRDLLDASRK--------------------------WLLAVAAWDTKGATSRAYNDEAGFRVVVALAWGYDWLYDHLSEDERRTVRSVLLERTRIAHARIHVFPYDSHAVRSLSAVLTPACIALQGESDEAGEWLDYTVEFLATLYSPWAPHYWMTGMAYLIEAANLIRSYIGYDLYQR--------PFFQNTGRFPLYTKAPGTRR--------ANFGDDSTLGDLPGLKLGYNVRQFAGVTGNGHYQWYFDHIKADATGTEMAFYNYGW--WDLNFDDLVYRHDYPQVEAVSPADL------------P
3	HHPRED-l	1hfe_L	0.165	0.373	1.923	threading_3	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SR-------------------------TVM--ERIEYDPKAD-----PD--KLHFVQIDEAKCIGCDTCSQYCPTAAIFGEMGEPHIEACINCGQCLTHCPE-NAIYEAQKDGKVKCIAMPAPAVRYALGTTGKMLAALQKLGFAHCWDTEFTADFVERLTKKLPQFT-
4	HHPRED-g	1hfe_L	0.176	0.333	1.900	threading_4	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRTVMERVQIDEAKCIGCDTCSQYCPTA-AIEMGEPPHIEACINCGQCLTHCPE-NAIYEASWKKLKGKVKCMPAPAVTGKMLAALQKLGEFTADVTKKSDMPLPETYYPELLPHFSTCKS
5	PROSPECT2	1uroa	0.078	0.896	1.524	threading_5	GFPEWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTLQPLRRFPLDAAIIFSDILVVPQGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVE---GGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIF-----------------AKDGHFALEEAQAGYEVVGLDWTVAPK-----KARECVGKTVTLQGNL------------DPCALYASEEEIGQLVKQMLDDFGPHYPDMDPEHVGAFVDASRLLRQ
6	SAM-T99	3bk7A	0.224	0.238	1.907	threading_6	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVRKMRIAIDYDKCNKCGLCERVCPVNIIIDEEPIIQEASCTGCGICVHKCPF-NAISIVNLPEQLEDCVHEPGRHGRALPPMGMR----------------------------------
7	HHPRED-l	2c42_A	0.152	0.941	1.921	threading_7	VNFRAKSMNPEHPHVRGTAQPANPYYLK--VPGIVAEYMQKVASLTGSSCETVINHLAAKGEKVRLYRPFVSEAALPAGDPLYVCSAFERGEAPEFSPAMVKSVYDNMS-G-AKKNHFTADTTPKGTITVGANKQAIKIIGEKIQSPAYVGIDMKHLPSGIKRTIANKFYNIDAVKIATDLGGRINMIMQTAIHKAYGKEKIVKMNTDAVDQAVTSLYPDSWKDVVKPLGT--SQFEKRAINVPQWVPENCIQCNQCAFVCPHSAILEEGIQINTLDCMGCGNCADICPPEKALVMQPLDTQRDA---QVPNLEYAARI-------P----VKSEVLPRDSLTPYVRVITQLRMFT-
8	HHPRED-g	1jb0_C	0.232	0.193	1.899	threading_8	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AHTV-KIYDTCIGCTQCVRACPTDV-LEIASSPRTEDCVGCKRCETACPT-DFLSIRVYLGAETT-----RSMGLAY----------------------------------------
9	PROSPECT2	1j93a	0.087	0.868	1.501	threading_9	TQPLRGKEVERPPRQAGRYMKSYQLLCEENVDLVVEISLQPWKVFGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEK---VREFIPEKSVPYVGEALTILRKEVNNQVLGFVGAPFTLASYVVE------GGSSKNFTKIKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLIL----------------------YASGSGGLLERL----PLTGVDVVSLDWTVDMADGRRRLGPNVAIQ------------GNVDPGVLFGSKEFITNRINDTVKKAGKGKVGTPEENFAHFFEIAKGLRY
10	HHPRED-l	1gte_A	0.158	0.835	1.920	threading_10	IVTNVSPRIVRGPGQSSSEKTAAYWCQSVT--ELKADPIVIASIMCSYDWMELSRKAEASGADALLSCPHG----LACQDPELVRNICRQVQIPPTDIARAAKEGGADGVTAAGKRTTYGGVSGTAIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLSAVQNQDFTVIQDYCTGLKALLYLKSIQGWDGPYLQRKKIIAEEKL----ERKPFI-PKKPIPAIKDVIGYLGTVVAVIDEEMCINCGKCYMTCGYQAQFDPETPTVTDTCTGCTLCLSVCPIIDCIRMVSRTT-PYEPKRGL-----------------------------------------------

Predicted Tertiary Structure


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TM-score=0.712 to 1t5jA SCOP code=a.209.1.1	TM-score=0.393 to 1durA SCOP code=d.58.1.1	TM-score=0.566 to 1fp3A SCOP code=a.102.1.3	TM-score=0.441 to 1durA SCOP code=d.58.1.1	TM-score=0.705 to 1t5jA SCOP code=a.209.1.1