Template-based Modeling Results for YCCE_ECOLI

Submitted Primary Sequence

>Length 418
MGSNIHGISCTANNYLKQAWNDIKNEYEKNQTYSITLFENTLVCFMRLYNELRRKVNEEDTPCLECESLEKEFEEMQNDNDLSLFMRILRTNDTQIYSGVSGGITYTIQYVRDIDIVRVSLPGRASESITDFKGYYWYNFMEYIENINACDDVFSEYCFDDENISVQPERINTPGISDLDSDIDLSGISFIQRETNQALGLKYAPVDGDGYCLLRAILVLKQHDYSWALVSYKMQKEVYNEFIKMVDKKTIEALVDTAFYNLREDVKTLFGVDLQSDNQIQGQSSLMSWSFLFFKKQFIDSCLNNEKCILHLPEFIFNDNKNLLALDTDTSDRIKAVKNFLVVLSDSICSLFIVNSNVASISLGNESFSTDEDLEYGYLMNTGNHYDVYLPPELFAQAYKLNNKEMNAQLDYLNRYAI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MGSNIHGISCTANNYLKQAWNDIKNEYEKNQTYSITLFENTLVCFMRLYNELRRKVNEEDTPCLECESLEKEFEEMQNDNDLSLFMRILRTNDTQIYSGVSGGITYTIQYVRDIDIVRVSLPGRASESITDFKGYYWYNFMEYIENINACDDVFSEYCFDDENISVQPERINTPGISDLDSDIDLSGISFIQRETNQALGLKYAPVDGDGYCLLRAILVLKQHDYSWALVSYKMQKEVYNEFIKMVDKKTIEALVDTAFYNLREDVKTLFGVDLQSDNQIQGQSSLMSWSFLFFKKQFIDSCLNNEKCILHLPEFIFNDNKNLLALDTDTSDRIKAVKNFLVVLSDSICSLFIVNSNVASISLGNESFSTDEDLEYGYLMNTGNHYDVYLPPELFAQAYKLNNKEMNAQLDYLNRYAI
CCCCCCCEEECCCHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEECCEEEEECCCCCCCCCCCCCCEEEHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEECCCCEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MGSNIHGISCTANNYLKQAWNDIKNEYEKNQTYSITLFENTLVCFMRLYNELRRKVNEEDTPCLECESLEKEFEEMQNDNDLSLFMRILRTNDTQIYSGVSGGITYTIQYVRDIDIVRVSLPGRASESITDFKGYYWYNFMEYIENINACDDVFSEYCFDDENISVQPERINTPGISDLDSDIDLSGISFIQRETNQALGLKYAPVDGDGYCLLRAILVLKQHDYSWALVSYKMQKEVYNEFIKMVDKKTIEALVDTAFYNLREDVKTLFGVDLQSDNQIQGQSSLMSWSFLFFKKQFIDSCLNNEKCILHLPEFIFNDNKNLLALDTDTSDRIKAVKNFLVVLSDSICSLFIVNSNVASISLGNESFSTDEDLEYGYLMNTGNHYDVYLPPELFAQAYKLNNKEMNAQLDYLNRYAI
5533120000101110220022024213433210010021000001200230143234331200103202310241333330100021032332100100220010001002112001010223123211203000000000003203100200030013333120223202121012022301120020013201321202102031200000000000233212111422321320033003101230020002100120130022011031321231222211111011101220031013333000100200022332000012222210310220010001100010022020000100333123332031000021111000100110013014022330111021023224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MGSNIHGISCTANNYLKQAWNDIKNEYEKNQTYSITLFENTLVCFMRLYNELRRKVNEEDTPCLECESLEKEFEEMQNDNDLSLFMRILRTNDTQIYSGVSGGITYTIQYVRDIDIVRVSLPGRASESITDFKGYYWYNFMEYIENINACDDVFSEYCFDDENISVQPERINTPGISDLDSDIDLSGISFIQRETNQALGLKYAPVDGDGYCLLRAILVLKQHDYSWALVSYKMQKEVYNEFIKMVDKKTIEALVDTAFYNLREDVKTLFGVDLQSDNQIQGQSSLMSWSFLFFKKQFIDSCLNNEKCILHLPEFIFNDNKNLLALDTDTSDRIKAVKNFLVVLSDSICSLFIVNSNVASISLGNESFSTDEDLEYGYLMNTGNHYDVYLPPELFAQAYKLNNKEMNAQLDYLNRYAI
1	PROSPECT2	1f0ia	0.084	0.940	1.331	threading_1	APGCWGDDKCADRVGTKRLLAKMTENIGNATRTVDISTFPNGAFQDAIVAGLKESAAKGNAAPHMNGIPSKYRDKL-----TAKLGKAAENITLNVAMTTSKTAFSWNILVVDGQSALTGGINSWKDDYLDTTHPVSALTGPAAGSAGRYLDTLWTWTCKNKSNIASVWFAASGNAGCMPT-------------MHKDTNPKASPATGNVPVIAVGGLGVGIKDVDPKSTFRPDLPTASDGLHDNTNADRDYDTVNPEESALRALVASAKGHIEISQQDLNATCPPLPRYDIRLYDALAAKMAAGVKVRIVVSDPANRGYSQ----IKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPNGKWADGHPYAQHHPSWLQIVESPEAAKQLDA---KLLDPQWKYSQETAT
2	HHPRED-l	3pfy_A	0.191	0.263	1.088	threading_2	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DPATVE--QQEHWFEKALRDKKGFIIKQ-KEDGACLFRAVADQVYGDQ-------D-HEVVRKHC---------DYL-KN-----AD----YFS-------------NYV-------------------------------------------GNHI-----E--A--------YN--RPVEVYQYSTEPQNEDEPIRVSY--HRNIHYNSVVNP--------------------------
3	HHPRED-g	3by4_A	0.201	0.356	1.153	threading_3	-------------------------------------------------------------------------------------------------------------------------------------------------------------------RVLKSTEM----------SIGGS----------GENVLSVHPVLDDNSCLFHAIAYGIF--------KQDSV------------------------RDLREMVSKEVLNN----P-------------VKFNDAILDK-----------P---N----------KDYAQWILKMESEIGIISDAL------AVAIYVVDIDAVKFNEDKFDNYILILFNGIHYDSTMNEDVLTAALQLASNLKQTGSF-------
4	PROSPECT2	2bw3A	0.115	0.974	1.327	threading_4	SHQSRELKTVSADCKKEAIEKCAQWVVRDCRPFSASGFIDIKFFIKVKAEYGEHVNVEELLPSPITLSRKVTSDAKEKKALIGREIKSAVEKDGDLWTDNYIKRNFTLHYHENNELRDLILTDRGANVVKSLANNIRINSFEETPELNPILACIVKYFKKANLQHRLRSSLKSECPTRWNSTYTLRSILDNWESVIQILAGETQRIVHINKSIIQTVNILDGFERIFKECSSPSLCFVVPSILKVKPDVGDVADIAKLKVNIIKNVRIIWEENLSIWHYTAFFFYPPALHQQEKVAQIKEFCLSKEDLELINRSSFNELSATQLNQDISTTSFFFPQLTQNNSREPPVCPSDEFE------FYRKEIVILSEDFKVEWWNLNSKKY-----PKLSKLALSLGQQTVDSLLSFYKNFCK
5	PROSPECT2	1jdha	0.093	0.931	1.272	threading_5	AVVNLIRLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVTLHNLSHHREGLLAIFKSGGIPLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT-------------TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKRVLKVLSVCSS---NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDIMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLQGAIAHQDTQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLELAQDKEAAEAIEAEGA-------------TAPLTELLHSRNEGVATYAAAVLFRMS
6	PROSPECT2	1ejlI	0.108	0.842	1.260	threading_6	GTVNVKGINSNNLESQLQATQAARKLLSREK-------QPPIDNIIRLIPKFVSFLGKTDCSPIQFESASEQTKAVVDGGAIPAFISLLASPHAHI----------------------------------------SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLANKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKSNITAGRQDQIQQVVNHGLVPFLVG-------------------VLSKADFKTQKEAAWAITNYTSGEQIVYLVHCGIIPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEENESVYKASLNLIEKYFS
7	PROSPECT2	1w36D	0.098	0.900	1.257	threading_7	VAGDEHPAVTLAAALLSHDAGNWEECLLASQAVSPMILCGDRLYLNRMWCNERTVAEVNHAIEVDEALLAQTLDKLDEINWQKVAAAVALTRRISVISGGPGTAALIQMADGERCRIRLAAPTG----------------KAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLHAGNPLHLDVLVVLPMMSRLIDALPDHAVEAGAVLGDICAYA----------NAGFTAERARQLSRLTGT-------HVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQS------GEDYIAMLEEALAGYGRYLDLLQAIQAFNEYQLLCALREGPFGRLPEHETTWAMTVHKRLSLYADERILSAAIATRTERRSG---LAALFSS
8	MUSTER	2vsfA	0.128	0.897	0.544	threading_8	SERKLKVLYLVRNSQEEQVIKELRSLSSTMKIRAIPMQGRVNMCILYRMVDDLHEINAES-LAKFCNMKKREVMA--NEAACPYFNFKIRSTKRFLFDEL-----PTAE-----EFYDY---GE------RNNVCPYESMKAALPDADVAEKFLSHWGVSRNQIVI-PDIGSIGSFR-----ISVESLNRADREAQAYGDPELIHVSDLIEMIRSALQSMVSERCG---GDVRIRFQEFMEYMRIMNK-RSEREIRSLLNYLYLFGEYVE-------NEKEKVGK-VPFSYCSSVASRIIAFSDEEKYAAILSP---EDGGYMQAACLDPSGILEVLKESKTIHFDFYSDITFPPENRYIAYYDGVSSKDEKELDMATVIKVKKNTIVYFPYSLMDRVENRDQKELYSMLKKFRRDGT
9	SPARKS	1a4ya	0.148	0.935	0.552	threading_9	-SLDIQSLDIQCEELSDARWAELLPLLQQCQ--VVRLDDCGLARCKDISSALRVNPALAEL-NLRSNELGDVGVHCVLQGTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS-----DNLLGD------AGLQLLCEGLLDPQCRLEKLQLEYCSLSAAASVLAKPDFKELTSNNDINGVRVLCQGLKEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPRLRTLWAKGCGDLCRVLRSLKELSL-AGNELGDEGATLLEPGCQLESLWVKSCFTAACCS-HFSSVLAQNRFLELQISNNEDAGVRELCQGLRVLCSSLAATLLANHSLRELDLSNNCLGDAESVRQPQLVLYDI----YWSEEMEDRLQAL--EKDKPSLRVIS----
10	PROSPECT2	1xm9A	0.086	0.861	1.256	threading_10	GLTAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGIAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEILLWNLSSTDELKEELIADALPVLAD-----------RVIIPFSGWCVVDPEVFFNATGCLRNLSSADAGRQTMRNYS--------------------GLIDSLMAYVQNCVAA-------SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQ----------NLTASKGLMSSGMSQLIGLKEKGLPQIARL----------LQSGNSDVVRSGASLLSNMSPLLHRVMGNQVFPEVTRLLTSHTGNTSNSERNLMASQPQLAKQYFSSSMLNNIINLASPKAAEAARLLLSDVL

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.555 to 1q32B SCOP code=d.136.1.3	TM-score=0.339 to 1tffA SCOP code=d.3.1.11	TM-score=0.366 to 1tffA SCOP code=d.3.1.11	TM-score=0.529 to 2bw3A SCOP code=a.270.1.1	TM-score=0.631 to 1wa5B SCOP code=a.118.1.1