Template-based Modeling Results for YCBX_ECOLI

Submitted Primary Sequence

>Length 369
MATLIRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQRCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGDVDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAAADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGDDGTILCCSCVPKTALKLAR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MATLIRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQRCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGDVDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAAADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGDDGTILCCSCVPKTALKLAR
CCEEEEEEEECCCCCCCEECCEEEECCCCCCCCCEEEEECCCCCEEECCCCCCEEEEEEEECCCEEEEEECCCCCEEEECCCCCCCCCCEEEECCCCEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCHHHCCCCEEEECCCCCCCCCCCEEEECCEEEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHEEECCCCCCEEECEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEECCCCCCHHHHHHHCCCCCCEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MATLIRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQRCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGDVDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAAADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGDDGTILCCSCVPKTALKLAR
422021001000311301203202023210311000000143121011341120010001024200001023132010211322233220100123020110231003000200323010110123222323432212111131110000121002201420222032320210000201211333312102112020200110120201101233133322111121020011133212101000001221111311110111212223122222133222223322010101121221203432100200242204011003111011020101202011243221232010000000132213115
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MATLIRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQRCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGDVDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAAADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGDDGTILCCSCVPKTALKLAR
1	MUSTER	2piaA	0.176	0.829	1.153	threading_1	-------------TTPQLRLKIASKEKIA--RDWSFELTDPQG-----APLPP---FEA-----NLTVAVPNGSRRTYSLCNDSQERNRYVIA---VKRDSNGRGGSISFIDDTSEGDAVEVSLPRNEFPLDKR-AKSFILVAGGIGITPMLSMARQLRAEGLRSFRLYYLTRD---PEGTAFF-DELTSDEWSDVKIHHD-----------------HGDPTKAFDFWSVFEKSKPAQHVYCC------PQALM---DTVRDMHWPSGTVHFESFGATNTNARENTPFTVRLSRSGTSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRD-MVLRDDTQIMVCVSRAKSALVLDL
2	SPARKS	2exna	0.118	0.344	3.099	threading_2	---MSTTAYQPIAECGATTQSE------AAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELRMGYLVLKAPGMLRLDIPLDVIEDDDSVMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDMAEVRWPSLE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	2pia_	0.150	0.778	2.049	threading_3	TTP-------QEDGFLRLKIASKEKIARDI---WSFELTDPQGAPLPPFEA-----------GANLTVAVPNGSRRTYSLCNDSQERNRYVIA---VKRDSNGRGGSISFIDDTSEGDAVEVSLPRNEFPLDK---------RAKSFILVALSMARQLRAEGLRSFTSDEWRSDVKIHHDHGDPTKAFDFWSVPAQHVYCC----------------------GPQALMDTVRDMTGHWP---------------------------SGTVHFESFGATNTNARENTPFTVRLSRSGTSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRDMVLRDDGTQIMVCVSRAKSALVLDL
4	PPA-I	2exnA	0.118	0.344	1.454	threading_4	---MSTTAYQPIAECGATTQS------EAAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELRMGYLVLKAPGMLRLDIPLDVIEDDDSVMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDMAEVRWPSLE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	SPARKS	2pia_	0.144	0.848	2.657	threading_5	------------DGFLRLKIASKEKIARDI---WSFELTDPQGAPL-PPFEA----------GANLTVAVPNGSRRTYSLCNDSQERNRYVIA---VKRDSNGRGGSISFIDDTSEGDAVEVSLPRNEFPLDKRAKSFILVAGGIGITPM-LSMARQLRAEGLRSFR-------LYYLTRDPEGTAFFDELTSDEWR----------SDVKIHHDHGDPTKAFDFWSVF---------EKSKPAQHVYCCGPQALMDTVRDMTGHWPSGTVHFESFGATNTNARENTPFTVRLSRSGTSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRDMVLRDDGTQIMVCVSRAKSALVLDL
6	HHPRED-l	2exn_A	0.110	0.344	4.539	threading_6	---MSTTAYQPIAECGATTQS------EAAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELRMGYLVLKAPGMLRLDIPLDVIESVRYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDMAEVRWPSLE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	PPA-I	2piaA	0.149	0.802	1.238	threading_7	----------------------------------------------TTPQEDGFLRLKIASKEKSFELTDPQGAPLTVAVPNGSNDSQERNRYVIAVKRDSNGRGGSISFIDDTSEGDAVEVSLPRNEFPLDKR-AKSFILVAGGIGITPMLSMARQLRAEGLRSFR-------LYYLTRDPEGTAFFDELTSDEWR----------SDVKIHHDHGDPTKAFDFWSVFEK---------SKPAQHVYCCGPQALMDTVRDMTGHWPSGTVHFESFGATNTNARENTPFTVRLSRSGTSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRDMVLRDDGTQIMVCVSRAKSALVLDL
8	HHPRED-g	2exn_A	0.110	0.344	5.220	threading_8	---MSTTAYQPIAECGATTQS------EAAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELRMGYLVLKAPGMLRLDIPLDVIESVRYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDMAEVRWPSLE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	SP3	2pia_	0.155	0.859	2.731	threading_9	--------TTP-QEDGFLRLKIASKEK--IARDWSFELTDPQGAPL-PPFEA----------GANLTVAVPNGSRRTYSLCNDSQERNRYVIA---VKRDSNGRGGSISFIDDTSEGDAVEVSLPRNEFPLDKRAKSFILVAGGIGITPM-LSMARQLRAE--------GLRSFRLYYLTR-DPEGTAFFDELTSDEWR-----SDVKIHHDHGDPTKAFDFWSVFEKSKPAQHVYCCGPQALMDTVRDMTGHWP------------SGTVHFESFGATNTNARENTPFTVRLSRSGTSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRDMVLRDDETQIMVCVSRAKSALVLDL
10	SP3	2exna	0.118	0.344	3.249	threading_10	---MSTTAYQPIAECGATTQSE------AAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELRMGYLVLKAPGMLRLDIPLDVIEDDDSVMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDMAEVRWPSLE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.888 to 2piaA SCOP code=b.43.4.2	TM-score=0.765 to 2piaA SCOP code=b.43.4.2	TM-score=0.621 to 2exnA SCOP code=b.165.1.1	TM-score=0.800 to 2piaA SCOP code=b.43.4.2	TM-score=0.630 to 2exnA SCOP code=b.165.1.1