Template-based Modeling Results for YCBK_ECOLI

Submitted Primary Sequence

>Length 182
MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNNLHTGESIKAEFFDGRGYIQEELAKLNHFFRDYRANKIKSIDPGLFDQLYRLQGLLGTRKPVQLISGYRSIDTNNELRARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRAGGVGYYPRSNFVHIDTGPARHW
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNNLHTGESIKAEFFDGRGYIQEELAKLNHFFRDYRANKIKSIDPGLFDQLYRLQGLLGTRKPVQLISGYRSIDTNNELRARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRAGGVGYYPRSNFVHIDTGPARHW
CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEECCCCCEEEECCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNNLHTGESIKAEFFDGRGYIQEELAKLNHFFRDYRANKIKSIDPGLFDQLYRLQGLLGTRKPVQLISGYRSIDTNNELRARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRAGGVGYYPRSNFVHIDTGPARHW
55412121120010000000000002100121123321101001122112020100123211331011022013113232122002000100120012022332000000010230021023313211430211301000010310202101200110321000011212000001122363
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNNLHTGESIKAEFFDGRGYIQEELAKLNHFFRDYRANKIKSIDPGLFDQLYRLQGLLGTRKPVQLISGYRSIDTNNELRARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRAGGVGYYPRSNFVHIDTGPARHW
1	MUSTER	1lbuA2	0.226	0.632	1.908	threading_1	---------------------------------------------------------PVNFT---YAELNRCNSDWSGGKVSAATLVTMWKLQAMRHAMG-DKPITVNGGFRSVTCNSNV------GASNSRHMYGHAADLGAGSQGFCALAQAARNHGFTEILYPGHNDHTHVAGGDGRFW
2	SPARKS	1lbu_2	0.252	0.632	2.042	threading_2	-------------------------------------------------------------VNFTYAELNRCNSDWSGGKVSAATLVTMWKLQAMRHAMG-DKPITVNGGFRSVTCNSNV-----GGASNSRHMYGHAADLGAGSQGFCALAQAARNHGFTGPGYPGHNDHTHVAGGDGRFW
3	PROSPECT2	1lbu_2	0.261	0.632	1.645	threading_3	V------------------------------------------NFTYAE-------------------LNRCNSDWSGGKVSAATARTMWKLQAMRHAMG-DKPITVNGGFRSVTCNSNV-----GGASNSRHMYGHAADLGAGSQGFCALAQAARNHGFTGPGYPGHNDHTHVAGGDGRFW
4	PPA-I	1lbuA2	0.216	0.637	3.302	threading_4	------------------------------------------------------------PVNFTYAELNRCNSDWSGGKVSAATLVTMWKLQAMRHAMGDK-PITVNGGFRSVTCNSNVG-----GASNSRHMYGHAADLGAGSQGFCALAQAARNHGFTEILYPGHNDHTHVAGGDGRFW
5	HHPRED-l	1lbu_A	0.191	0.835	4.172	threading_5	GCYTW-SG--TLSEGEAVR-------QLQIRVAG-----YPG---TGA-QL----AIDGQFGPATKAAVQRFQSAYGLAADGIAGPATFNKLQAMRHAMG-DKPITVNGGFRSVTCNSNV-----GGASNSRHMYGHAADLGAGSQGFCALAQAARNHGFTEIGYPGHNDHTHVAGGDGRF-
6	HHPRED-g	1lbu_A	0.228	0.797	4.221	threading_6	------------------------------DGCYTWSGTLS--EGSSGEAVAAQLAIDGQFGPATKAAVQRFQSAYGLAADGIAGPATFNKIYQLQAHAMGDKPITVNGGFRSVTCNSNV-----GGASNSRHMYGHAADLGAGSQGFCALAQAARNHGFTEIGYPGHNDHTHVAGGDGRFW
7	SP3	1lbu_2	0.252	0.632	1.816	threading_7	----------------------------------------------------------VNFT---YAELNRCNSDWSGGKVSAATLVTMWKLQAMRHAMG-DKPITVNGGFRSVTCNSNV-----GGASNSRHMYGHAADLGAGSQGFCALAQAARNHGFTGPGYPGHNDHTHVAGGDGRFW
8	SAM-T99	1lbuA2	0.270	0.489	3.055	threading_8	---------------------------------------------------------------------------------------TMWKLQAMRHAMG-DKPITVNGGFRSVTCNSNV-----GGASNSRHMYGHAADLGAGSQGFCALAQAARNHGFTGPGYPGHNDHTHVAGGDGRFW
9	MUSTER	1lbuA	0.199	0.857	1.382	threading_9	IDQFGPATKAAVQRFQSAYGPATFNKIYQLQDDDCTPVNFTYAELNRCNS----DWSGGKVSAATARANA---------------LVTMWKLQAMRHAMG-DKPITVNGGFRSVTCNSNV------GASNSRHMYGHAADLGAGSQGFCALAQAARNHGFTEILYPGHNDHTHVAGGDGRFW
10	SPARKS	1lbu_	0.196	0.896	1.373	threading_10	TLSEGSS-------GEAVRQLQIRVAGYPGTGAQLAI------DGQFGPATKAAVQRDGIAGPATFNKIYQLQDDDTYAELNRCNLVTMWKLQAMRHAMG-DKPITVNGGFRSVTCNSNV-----GGASNSRHMYGHAADLGAGSQGFCALAQAARNHGFTGPGYPGHNDHTHVAGGDGRFW

Predicted Tertiary Structure


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TM-score=0.740 to 1lbuA SCOP code=a.20.1.1	TM-score=0.726 to 1lbuA SCOP code=a.20.1.1	TM-score=0.724 to 1lbuA SCOP code=a.20.1.1	TM-score=0.708 to 1lbuA SCOP code=a.20.1.1	TM-score=0.740 to 1lbuA SCOP code=a.20.1.1