Template-based Modeling Results for YCBJ_ECOLI

Submitted Primary Sequence

>Length 297
MEQLRAELSHLLGEKLSRIECVNEKADTALWALYDSQGNPMPLMARSFSTPGKARQLAWKTTMLARSGTVRMPTIYGVMTHEEHPGPDVLLLERMRGVSVEAPARTPERWEQLKDQIVEALLAWHRQDSRGCVGAVDNTQENFWPSWYRQHVEVLWTTLNQFNNTGLTMQDKRILFRTRECLPALFEGFNDNCVLIHGNFCLRSMLKDSRSDQLLAMVGPGLMLWAPREYELFRLMDNSLAEDLLWSYLQRAPVAESFIWRRWLYVLWDEVAQLVNTGRFSRRNFDLASKSLLPWLA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MEQLRAELSHLLGEKLSRIECVNEKADTALWALYDSQGNPMPLMARSFSTPGKARQLAWKTTMLARSGTVRMPTIYGVMTHEEHPGPDVLLLERMRGVSVEAPARTPERWEQLKDQIVEALLAWHRQDSRGCVGAVDNTQENFWPSWYRQHVEVLWTTLNQFNNTGLTMQDKRILFRTRECLPALFEGFNDNCVLIHGNFCLRSMLKDSRSDQLLAMVGPGLMLWAPREYELFRLMDNSLAEDLLWSYLQRAPVAESFIWRRWLYVLWDEVAQLVNTGRFSRRNFDLASKSLLPWLA
CHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHCCCCCCCCCEEEEECHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MEQLRAELSHLLGEKLSRIECVNEKADTALWALYDSQGNPMPLMARSFSTPGKARQLAWKTTMLARSGTVRMPTIYGVMTHEEHPGPDVLLLERMRGVSVEAPARTPERWEQLKDQIVEALLAWHRQDSRGCVGAVDNTQENFWPSWYRQHVEVLWTTLNQFNNTGLTMQDKRILFRTRECLPALFEGFNDNCVLIHGNFCLRSMLKDSRSDQLLAMVGPGLMLWAPREYELFRLMDNSLAEDLLWSYLQRAPVAESFIWRRWLYVLWDEVAQLVNTGRFSRRNFDLASKSLLPWLA
453012201311223121020133311000000113322101000221103020111011011022222120010000002232212100001103112131223123202201210030001013111410111131123211110021002000000120232001231131012012002200321332000000000020003113132000000001011112101001101231133002001330212220110100010021001011113112200110032102224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MEQLRAELSHLLGEKLSRIECVNEKADTALWALYDSQGNPMPLMARSFSTPGKARQLAWKTTMLARSGTVRMPTIYGVMTHEEHPGPDVLLLERMRGVSVEAPARTPERWEQLKDQIVEALLAWHRQDSRGCVGAVDNTQENFWPSWYRQHVEVLWTTLNQFNNTGLTMQDKRILFRTRECLPALFEGFNDNCVLIHGNFCLRSMLKDSRSDQLLAMVGPGLMLWAPREYELFRLMDNSLAEDLLWSYLQRAPVAESFIWRRWLYVLWDEVAQLVNTGRFSRRNFDLASKSLLPWLA
1	MUSTER	3f7wA	0.211	0.926	2.370	threading_1	VNSVAARVTELTGREVAAVAERGHSHRWHLYRVELADGTPLFVKALPDALDGLFRAEALGLDWLGRSFGSPVPQVAGWDD--------RTLAEWVDERPP-----TPEAAERFGHQLAAHLAGAESATWDGYIGPLDNTPRSTWPEFYAEQRILPYLRRAA-DRGALTPGDVRLVEKVLDALDHLA-GDPEPPARIHGDLWNGNVLWQDD---GAVVIDPA-AHGGHREADLALALFGPYLDRVRDAYNEVAPLAEGWRARIPLHQLHPLLVHVCLFGAAYRTTLVDTARAAL---A
2	SPARKS	3f7wa	0.194	0.919	4.356	threading_2	VNSVAARVTELTGREVAAVAERGHSHRWHLYRVELADGTPLFVKDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD--------DRTLAEWVDERPPT---------PEAAERFGHQLAAHLAAESFGADGYIGPLPDNTPRSTWPEFYAEILPYLRRAADRGLTPGDVRLVEKVLDALDHLA-GDPEPPARIHGDLWNGNVLWQD---DGAVVIDPA-AHGGHREADLALLFGLPYLDRVRDAYNEVAPLAEGWRARIPLHQLHPLLVHVCLFGAAYRTTLVDTARAALRA--
3	PROSPECT2	3d1uA	0.202	0.933	2.628	threading_3	VNSVAARVTELTGREVAAVAERGHSHRWHLYRVELADGTPLFVKADAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD--------DRTLAEWVDE-----RPPTPEAAERFGHQLAAHLAGAESATWDGYIGPLPDNTPRSTWPEFYAEQRILPYLRRAADRGALTPGDVRLVEKVLDALDHLA-GDPEPPARIHGDLWNGNVLWQDD----GAVVIDPAAHGGHREADLLALFGLPYLDRVRDAYNEVAPLAEGWRARIPLHQLHPLLVHVCLFGAAYRTTLVDTARAALR--A
4	PPA-I	3f7wA	0.191	0.933	4.544	threading_4	VNSVAARVTELTGREVAAVAERGHSHRWHLYRVELADGTPLFVKADAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWDD--------RTLAEWVDER-----PPTPEAAERFGHQLAAHLAGAESATWDGYIGPLPDNTPRSTWPEFYAEQRILPYLRRAADRGALTPGDVRLVEKVLDALDHLA-GDPEPPARIHGDLWNGNVLWQDD---GAVVIDPA-AHGGHREADLALLFGLPYLDRVRDAYNEVAPLAEGWRARIPLHQLHPLLVHVCLFGAAYRTTLVDTARAALRA--
5	HHPRED-l	3jr1_A	0.164	0.926	4.760	threading_5	-WSISQVLAEQFGAYIKHKEKLYSGE-NEIWLINDEVQTVFVKINERS-YRS-FRAEADQLALLAKTNSINVPLVYGIGNSQ---GHSFLLLEALNKSKNK-----QSSFTI-FAEKIAQLHQIQGPDKYGLDFDTPIYQPNDWQSWAKFFSERIGWQLQICKEKGLIFGN---IDLIVQIVADTLSKHNPKPSILHGNLWIENCI-QV--DDKIFVCNPA-CYWGDRECDIAFSLFEPFPTNFYQRYNEIYPLEEGYLERKLIYQLYYLLNFSYRYYNSYVSLTQKLINQILHK--
6	HHPRED-g	3jr1_A	0.147	0.919	4.040	threading_6	WKSISQVLAEQFGAYIKHKEKLYSGE-NEIWLINDEVQTVFVKINERSY-RS-FRAEADQLALLAKTNSINVPLVYGIGNSQ---GHSFLLLEALNKSKNKQ-----S----SFTIFAEKIAQLHQIQGPKYGLDGPIYQPNDWQTSWAKFFNRIGWQLQICKEKGLIFGN---IDLIVQIVADTLSKHNPKPSILHGNLWIENCI-QVDD--KIFVCNPA-CYWGDRECDIAFSLFEPFPTNFYQRYNEIYPLEEGYLERKLIYQLYYLLNFSYRYYNSYVSLTQKLINQILHK--
7	SP3	3f7wa	0.194	0.919	3.910	threading_7	VNSVAARVTELTGREVAAVAERGHSHRWHLYRVELADGTPLFVKDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD--------DRTLAEWVDERPPT---------PEAAERFGHQLAAHLAAESFGADGYIGPLPDNTPRSTWPEFYAEILPYLRRAADRGLTPGDVRLVEKVLDALDHLA-GDPEPPARIHGDLWNGNVLWQDD---GAVVIDPA-AHGGHREADLALLFGLPYLDRVRDAYNEVAPLAEGWRARIPLHQLHPLLVHVCLFGAAYRTTLVDTARAALRA--
8	SAM-T99	3jr1A	0.172	0.923	5.370	threading_8	YFQGWKSISQVLAEQFGAYYFIKEKLYSGWLINDEVQTVFVKINERS---YRSFRAEADQLALLAKTNSINVPLVYGIGNSQ---GHSFLLLEALN------KSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTS-----WAKFFSENRIGWQLQEKGLIFGNIDLIADTLSKHNPKPSILHGNLWIENCIQVDDKI----FVCNPACYWGDRECDIAFSSLFEFPTNFYQRYNEIYPLEEGYLERKLIYQLYYLLNRYYNKKQSYVSLTQKLINQILHK--
9	MUSTER	3jr1A	0.154	0.919	2.149	threading_9	WKSISQVLAEQFGAYIKHKEKLYSG-ENEIWLINDEVQTVFVKINER--SYRSFRAEADQLALLAKTNSINVPLVYGIGNSQ---GHSFLLLEALNKSKNKQ---------SSFTIFAEKIAQLHQIQPDKYGLDFDTYQPNDWSWAKFFSENRIGWQLQICKEKGLIFGN---IDLIVQIVADTLSKHNPKPSILHGNLWIENCIQV---DDKIFVCNPA-CYWGDRECDIAFSSFEPFPTNFYQRYNEIYPLEEGYLERKLIYQLYYLLNFSYRYKQSYVSLTQKLINQILHK--
10	SPARKS	3d1ua	0.194	0.919	4.350	threading_10	VNSVAARVTELTGREVAAVAERGHSHRWHLYRVELADGTPLFVKDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD--------DRTLAEWVDERPPT---------PEAAERFGHQLAAHLAAESFGADGYIGPLPDNTPRSTWPEFYAEILPYLRRAADRGLTPGDVRLVEKVLDALDHLA-GDPEPPARIHGDLWNGNVLWQD---DGAVVIDPA-AHGGHREADLALLFGLPYLDRVRDAYNEVAPLAEGWRARIPLHQLHPLLVHVCLFGAAYRTTLVDTARAALRA--

Predicted Tertiary Structure


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TM-score=0.692 to 1zylA SCOP code=d.144.1.6	TM-score=0.681 to 1zylA SCOP code=d.144.1.6	TM-score=0.680 to 1zylA SCOP code=d.144.1.6	TM-score=0.694 to 1zylA SCOP code=d.144.1.6	TM-score=0.691 to 1zylA SCOP code=d.144.1.6