Template-based Modeling Results for YCBF_ECOLI

Submitted Primary Sequence

>Length 236
MTNTWNRLALLIFAVLSLLVAGELQAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNVGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGGLSAKKEQNLP
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTNTWNRLALLIFAVLSLLVAGELQAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNVGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGGLSAKKEQNLP
CCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEECCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCEEECCCEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCHHHHHHHCEEEECCCEEEEECCCCEEEEEEEEEECCEECCCCCEECCCCCEEEECCCCCCCCEEEEEEEECCCCCCCCEEECCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTNTWNRLALLIFAVLSLLVAGELQAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNVGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGGLSAKKEQNLP
54211010010000000000002000000010000002344310101001224221001010021232222322223120000010010233320011001133321323211000000120122424421020001000200010321322222013312122232001012222100000101032221332110013222202124222202000100002102122122214
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTNTWNRLALLIFAVLSLLVAGELQAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNVGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGGLSAKKEQNLP
1	MUSTER	2co6B	0.306	0.873	2.888	threading_1	------------------LNSATKLFSVKLGATRVIYHAGTG-ATLSVSNPQNYPILVQSSVKAADKS-------SPAPFLVMPPLFRLEANQQSQLRIVRTGGD-MPTDRETLQWVCIKAVPPENEATLDLNLSINACDKLIFRPDAVKGTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYVPPFADKTLNMPGS--HGDIEWRVITDFGGESHPFHYVL-
2	SPARKS	1p5ua	0.292	0.856	5.414	threading_2	----------------------SKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYDENK----------EPFVVTPPLFRLDAKQQNSLRIAQAGG-VFPRDKESLKWLCVKGIPPKDPDKVFVQFAINNCIKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSI-PSHYIPPKSTWAFDLPKGLAGRNVSWRIINDQGGLDRLYSKNVT
3	PROSPECT2	1p5uA	0.292	0.856	3.886	threading_3	----------------------SKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYDEN----------KEPFVVTPPLFRLDAKQQNSLRIAQAG-GVFPRDKESLKWLCVKGIPPKDPDKVFVQFAINNCIKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSIPSH-YIPPKSTWAFDLPKGLAARNVSWRIINDQGGLDRLYSKNVT
4	PPA-I	2co6B	0.301	0.873	2.876	threading_4	------------------LNSATKLFSVKLGATRVIYHAGTG-ATLSVSNPQNYPILVQSSVKAADKS-------SPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDRETLQWVCIKAVPPENEPGLDLNLSINACDKLIFRPDAVKGTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYVPPFADKTLNMPGS--HGDIEWRVITDFGGESHPFHYVL-
5	HHPRED-l	2co7_B	0.310	0.835	5.638	threading_5	---------------------ATKLFSVKLGATRVIYHAGTAGATLSVSNPQNYPILVQSSVKAAD-------KSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDRETLQWVCIKAVPPE---TLDLNLSINACDKLIFRPDAVKGTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYVPPFADKTLN------HGDIEWRVITDFGGESHPFHYVL-
6	HHPRED-g	2co7_B	0.311	0.831	4.925	threading_6	---------------------ATKLFSVKLGATRVIYHAGTAGATLSVSNPQNYPILVQSSVKAADKS-------SPAPFLVMPPLFRLEANQQSQLRIVRTG-GDMPTDRETLQWVCIKAVPPE----LDLNLSINACDKLIFRPDAVKGTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYVPPFADKTLN------HGDIEWRVITDFGGESHPFHYVL-
7	SP3	1p5ua	0.287	0.856	5.207	threading_7	----------------------SKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYDENKE----------PFVVTPPLFRLDAKQQNSLRIAQAGG-VFPRDKESLKWLCVKGIPPKDPDGVFVQFAINNCIKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSI-PSHYIPPKSTWAFDLPKGLGARNVSWRIINDQGGLDRLYSKNVT
8	SAM-T99	3dpaA	0.267	0.856	4.703	threading_8	--------------------------AVSLDRTRAVFDGSEKSMTLDISNDNKLPYLAQAWIENEN-----QEKIITGPVIATPPVQRLDPGAKSMVRLSTTPDSKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNEVWDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAFETVMLSPRSEQTVKSANY---NTPYLSYINDYGGRPVLSFICNG
9	MUSTER	3q48A	0.335	0.809	2.873	threading_9	----------------------------IAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPE--ELQVPFSVTPAVTRVEPNGGAVLRIAYLKA-PLPTDRESLFWLNILEVPP--------RFSFRSRFKLFFRPSQLKS-VDSAAGKLQWKFL-EVVQVNNPTPYYVSFASVELIGRVMSGKGMVAPFSTKEFDWM---EAASVRYEVINDYGGRNT-HDRALG
10	SPARKS	2co6b	0.301	0.873	5.300	threading_10	------------------LNSATKLFSVKLGATRVIYHAGTG-ATLSVSNPQNYPILVQSSVKAADK-------SSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDRETLQWVCIKAVPPENEPGLDLNLSINACDKLIFRPDAVKGTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYVPPFADKTLNMPGS--HGDIEWRVITDFGGESHPFHYVL-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.906 to 2co6B SCOP code=b.1.11.1	TM-score=0.918 to 2co6B SCOP code=b.1.11.1	TM-score=0.895 to 1p5uA SCOP code=b.1.11.1	TM-score=0.894 to 1p5uA SCOP code=b.1.11.1	TM-score=0.918 to 2co6B SCOP code=b.1.11.1