Template-based Modeling Results for YCBC_ECOLI

Submitted Primary Sequence

>Length 259
MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTGKIFISIGWLALLLLSLQPVADRLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLDLPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPLNPWERAIPSPVWLMHSDRVGYETLGRIWQWLKGSSGEPRQE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTGKIFISIGWLALLLLSLQPVADRLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLDLPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPLNPWERAIPSPVWLMHSDRVGYETLGRIWQWLKGSSGEPRQE
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTGKIFISIGWLALLLLSLQPVADRLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLDLPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPLNPWERAIPSPVWLMHSDRVGYETLGRIWQWLKGSSGEPRQE
2000012001100100000000000000000112022001000000000000000100012002101221223332440100000000122233222223213200100120020033221110000012142321210200020022120133000113213312210000221123220000001000110010023110100000022211322112012101211101100200110000000102123233445
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTGKIFISIGWLALLLLSLQPVADRLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLDLPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPLNPWERAIPSPVWLMHSDRVGYETLGRIWQWLKGSSGEPRQE
1	MUSTER	3ca8A	0.154	0.753	1.090	threading_1	---------------------------------------------PFPTL--PATIDAINVIGQWLAQDDFSGEVPYQADCVILAGNAV----------------MPTIDAACKIARDQ-QIPLLISGGIGRTTGRAEATILADIAHQFHIPHEKIWIEDQSTNCGENARFSIALLNVHTAIVVQDPTMQRRTMATFRRMTGDNPDAPPGFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPRLRDDSDGYGPRG
2	SPARKS	3ca8a	0.153	0.730	1.881	threading_2	-----------------------------------------------------PFPTLSPATIDAINVIGQSGEVPYQADCVILAGNAV----------------MPTIDAACKIARDQ-QIPLLISGGIGHSTGRAEATILADIAHQWHIPHEKIWIEDQSTNCGENARFSIALLNQHTAIVVQDPTMQRRTMATFRRMTGDNPDAPRGFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPRLRDDSDGYGPRG
3	PROSPECT2	3ca8A	0.168	0.757	2.098	threading_3	PFPTLSPATIDAI----------------------------------------------NVIGQWLAQDDFSGEVPYQADCVILAGNAV----------------MPTIDAACKIARDQQIPLLISGGIGIRTTGRAEATILADIAHQWHIPHEKIWIEDQSTNCGENARFSIALLRVHTAIVVQDPTMQRRTMATFRRMTGDNPDAPRWLSYPGFVPQDSVIFINQLQGLWPVERYLSLLTGEL-PRLRDDSDESRSL
4	PPA-I	3ca8A	0.152	0.761	1.189	threading_4	----------------------------------------------PFPTLSPATIDAINVIGQWLAQDDFSGEVPYQADCVILAGNAV----------------MPTIDAACKIARDQQIPLLISGGNTIRTTGRAEATILADIAHQFHIPHEKIWIEDQSTNCGENARFSIALLNVHTAIVVQDPTMQRRTMATFRRMTGDNPDAPRGFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPRLRDDSDGYGPRG
5	HHPRED-l	3ca8_A	0.170	0.726	5.311	threading_5	------------------------------------------------PFPTLSPADAINVIGQWLAQDDFSGEVPYQADCVILAGNAVM----------------PTIDAACKIARDQQIP-LLISGGIGHTTGRAEATILADIAHQFHIPHEKIWIEDQSTNCGENARFSIALLNQHTAIVVQDPTMQRRTMATFRRMDNPWLSYPGF-VPNNADSV---IFINQLQGLWPVERYLSLLTGEL-PRLRDDSGPRGR-
6	HHPRED-g	3ca8_A	0.161	0.741	5.885	threading_6	---------------------------------PFPTLSPAT---------IDAINVIGQWLA----QDDFSGEVPYQADCVILAGNAVM----------------PTIDAACKIARDQQIP-LLISGGIGHTTGRAEATILADIAHQFHIPHEKIWIEDQSTNCGENARFSIALLNQHTAIVVQDPTMQRRTMATFRRMDNPWLSYPGFVPGNNADS---VIFINQLQGLWPVERYLSLLTGEL-PRLRDDSDGYGVD
7	SP3	3ca8a	0.148	0.757	1.899	threading_7	------------------------------------------PFPTLSPATIDAINVIGQWLAQD----DFSGEVPYQADCVILAGNAV----------------MPTIDAACKIARDQQ-IPLLISGGIGHSTGRAEATILADIAHQWHIPHEKIWIEDQSTNCGENARFSIALLRVHTAIVVQDPTMQRRTMATFRRMTGDNPDAPRGFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPRLRDDSDGYGPRG
8	SAM-T99	3ca8A	0.179	0.583	2.290	threading_8	PFPTLSPATIDAINVIGQWLAQDDFSGEVPY----------------------------------------------QADCVILAGNAVMPT----------------IDAACKIARDQQIP-LLISGGIGHTTGRAEATILADIAHQWHIPHEKIWIEDQSTNCGENARFSIALLRVHTAIVVQDPTMQRRTMATFRRM--------------DNPDAPRWLSYPGF-------------------------------
9	MUSTER	3irsA	0.138	0.923	0.684	threading_9	MGFL-----RIYTRPDIRNRFTRQLGFEPAPSAEEKSLELMFEEMAAAGVCVGVLGSVSNADVAAVAKAYPEAATRKEAQEILDLGIIVNLEPGVWATPMHVDD--RRLYPLYAFCEDNGIPVIMMTGGAGPDITYTNPEHIDRVLGDF--PDLTVVSSHGNWPWVQEIIHVAFRRP--NLYLSPDMYLHADFIQAANSFLADRMLFGTAY-----PMCPLKEYTEWFLTLPIKPDAMEKILHGNAERLLAQAGR----
10	SPARKS	2h0aa	0.111	0.803	0.931	threading_10	---------------------------------------------TVSVLLPFVATEFYRRLVEGIEGVLLEARLKYLTDGLILASYDLTRDAQNPRYDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRRTVRMAGFQEALKEAGRPPDRLYITR---HSQEGGRLALRHFLEKANVFAGADQVALGVLEEAVRLGLTP---GRDVRVLGFDGHPFAEEAGLSTIAQPVEAMGARAAQLLLERMRGYQGPPREV

Predicted Tertiary Structure


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TM-score=0.491 to 2d13A SCOP code=c.26.2.1	TM-score=0.487 to 2d13A SCOP code=c.26.2.1	TM-score=0.488 to 2d13A SCOP code=c.26.2.1	TM-score=0.482 to 2d13A SCOP code=c.26.2.1	TM-score=0.491 to 2d13A SCOP code=c.26.2.1