Template-based Modeling Results for YCAQ_ECOLI

Submitted Primary Sequence

>Length 410
MSLPHLSLADARNLHLAAQGLLNKPRRRASLEDIPATISRMSLLQIDTINIVARSPYLVLFSRLGNYPAQWLDESLARGELMEYWAHEACFMPRSDFRLIRHRMLAPEKMGWKYKDAWMQEHEAEIAQLIQHIHDKGPVRSADFEHPRKGASGWWEWKPHKRHLEGLFTAGKVMVIERRNFQRVYDLTHRVMPDWDDERDLVSQTEAEIIMLDNSARSLGIFREQWLADYYRLKRPALAAWREARAEQQQIIAVHVEKLGNLWLHDDLLPLLERALAGKLTATHSAVLSPFDPVVWDRKRAEQLFDFSYRLECYTPAPKRQYGYFVLPLLHRGQLVGRMDAKMHRQTGILEVISLWLQEGIKPTTTLQKGLRQAITDFANWQQATRVTLGCCPQGLFTDCRTGWEIDPVA
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSLPHLSLADARNLHLAAQGLLNKPRRRASLEDIPATISRMSLLQIDTINIVARSPYLVLFSRLGNYPAQWLDESLARGELMEYWAHEACFMPRSDFRLIRHRMLAPEKMGWKYKDAWMQEHEAEIAQLIQHIHDKGPVRSADFEHPRKGASGWWEWKPHKRHLEGLFTAGKVMVIERRNFQRVYDLTHRVMPDWDDERDLVSQTEAEIIMLDNSARSLGIFREQWLADYYRLKRPALAAWREARAEQQQIIAVHVEKLGNLWLHDDLLPLLERALAGKLTATHSAVLSPFDPVVWDRKRAEQLFDFSYRLECYTPAPKRQYGYFVLPLLHRGQLVGRMDAKMHRQTGILEVISLWLQEGIKPTTTLQKGLRQAITDFANWQQATRVTLGCCPQGLFTDCRTGWEIDPVA
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCEEEECCCCEEECCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCEEEECCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCCCCCCCHHCCCCCCCCCEEECCCCCHHHHCCHHHHHHCCCCEEEEEECHHHHHCCCEEECCEEECCEEEEEEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCCCCCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSLPHLSLADARNLHLAAQGLLNKPRRRASLEDIPATISRMSLLQIDTINIVARSPYLVLFSRLGNYPAQWLDESLARGELMEYWAHEACFMPRSDFRLIRHRMLAPEKMGWKYKDAWMQEHEAEIAQLIQHIHDKGPVRSADFEHPRKGASGWWEWKPHKRHLEGLFTAGKVMVIERRNFQRVYDLTHRVMPDWDDERDLVSQTEAEIIMLDNSARSLGIFREQWLADYYRLKRPALAAWREARAEQQQIIAVHVEKLGNLWLHDDLLPLLERALAGKLTATHSAVLSPFDPVVWDRKRAEQLFDFSYRLECYTPAPKRQYGYFVLPLLHRGQLVGRMDAKMHRQTGILEVISLWLQEGIKPTTTLQKGLRQAITDFANWQQATRVTLGCCPQGLFTDCRTGWEIDPVA
54233112210110001120023324332213100200330100101311112211100000102312130012002402001000110000011002001100100331123112211332321022003002530102022033333121111203101200100100010000324212200100220013211423212222001100110031001021310010131333200210210153330010202412211012311210331121422221000001011001113101200211010100011123210000000012110001000202242110110001023224222200300120011003114022010110231002103312322334
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSLPHLSLADARNLHLAAQGLLNKPRRRASLEDIPATISRMSLLQIDTINIVARSPYLVLFSRLGNYPAQWLDESLARGELMEYWAHEACFMPRSDFRLIRHRMLAPEKMGWKYKDAWMQEHEAEIAQLIQHIHDKGPVRSADFEHPRKGASGWWEWKPHKRHLEGLFTAGKVMVIERRNFQRVYDLTHRVMPDWDDERDLVSQTEAEIIMLDNSARSLGIFREQWLADYYRLKRPALAAWREARAEQQQIIAVHVEKLGNLWLHDDLLPLLERALAGKLTATHSAVLSPFDPVVWDRKRAEQLFDFSYRLECYTPAPKRQYGYFVLPLLHRGQLVGRMDAKMHRQTGILEVISLWLQEGIKPTTTLQKGLRQAITDFANWQQATRVTLGCCPQGLFTDCRTGWEIDPVA
1	PROSPECT2	1l5aa	0.084	0.846	1.411	threading_1	ML------LAQKPFWQRHLAYPHINLGPLDTTLLLRALHLTRFSAQGELYWHPFSPPIDYQLSIHLEAEPLAWRQIEHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQ--SLLSGQTPTAAFKPYQSYLEEEAA------------------YLTSHRYWQDKQFWQGY------------------LREAPDLTLTSATYDPQSQLNHLLLKLANANQIGWPDALVALC-------ALYLESAEPDAPWLWLPFMNRWGSVAANVPGLMVNSLPLLRLSAQQTSLGYRIEQIEDQGLNAEQSYFMSPFINILPFESPHFADTELKVLASGSAEGINFTFRGSPQHELCLDITADLASYPQSHQSHCERFPRFFEQLLARFQQV-----EQDVARLLA-------EPAA
2	HHPRED-l	3lmm_A	0.100	0.610	1.071	threading_2	DSCRPVDRAEWWEYQRAQSGFDP-AQVAFAELTDEELLRGIGALDAEGF---LSQAGKLLFTSLDR-----------TAIELSIFDVHGGVLRVPEKSCLDYLEQALNVVKNVVHKPVPEIPRLAVREA-NA-IHSEPITSENLADLYRALGLVDQGVGVDR-YQA-IALGHTIEEAGPFVETTLVGGLELVSSIVPEARQDDY---RIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQAPLIIAH---D-GVWLLGNACREILRK-----------VE---------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	1f8ra	0.081	0.932	1.298	threading_3	RNPLAFQENDYEEFLEIARNGLKATSNPKHMAGLSAAYVRVRTYRNEEAGWYANLGPMRLP---EKHRIVREYIRKFDLRLNEFSDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVE------ELKRTNCSYILNKYDTYSTKEYLI-----------------KEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEK--RFDEIVDGMDKLPTAMYRDIQDNAQVIKIQQNDQKVTVVYETLSKETPSVCTTSRAVRLIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIFFQALDFKDCADIVFNDLSLISLDKYAMGGITTFTPQHFSDPLTASQGTAQAH
4	PROSPECT2	1jiha	0.079	0.924	1.245	threading_4	MS--KFTWKELIQLGQMRCGLSKEKYGISRMDTIQEALKKTAVFKKGEDFWQYHDGCGSWVQDPAKQIRKALKIFKSACDLVERASIDEVFLDLGR--ICFNMLMFDNEYELTGDLKLKDALSNIREAFIGEKIKSLKFEGDVFNPEGRDLITDWDDVILALGSQVCKILGYTTSCNYKKPDAQTIVKNDCLLDFLDCGKFEITSGVLGKELIDVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKFKLSRGRYGLPLSSRPVVKSMMSNKNLRGKSCNSIVDCISWLEVFCAELTSRIQDLEQEYN--------KIVIPRTVSISLKTKSYEVYRKSGPVAYKGINFQS--HELLKVGIKF-----------------VTDLDIKGKNKSYYP
5	PROSPECT2	1sezA	0.079	0.837	1.237	threading_5	L---------AAAYKLKIHGLNEGANTTESEGDVTFLIDSLG-----------------LREKQQFPLSQNKRYIARNGTPVLLPSN------PIDLIKSNFLSTGSKLQLLEPILWSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSHHSFPELWNLEKRFGSVILGAIRSKLSKTSANKKRQRGSFSFLGGQ--------TLTDAICKDLREDE---------------------LRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVITAPLCDVKSKIKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSS------FPDRAPNNVYLYTTFVGGSRNKASRTELKEIVTSDLKQLLGAEGEPSKAFPLYGHNYDSVLDAIDKEKNLS
6	PROSPECT2	3a0oA3	0.083	0.827	1.233	threading_6	G-----------RSARHAAAQTSHPRLWLNSEQLSAFADAVA----------KDPNHCGWAEFY----EKSVEPWLERPVMPEPQPYPNNTRVATLWQMYIDCQEVIYAIRHLAIAGRVLGRDDLLDASRKWLLA-------VAAWDTKGATSRAYNDEAGFRVVVALAW-------------GYDWLYDHLSEDERRTVRSVLLERTREVADHVIAHARIHVLTPACIALQGESDEAGEWLDYTVE-----------------------FLATLYSPWAGTDGGWAEGPMAYLIEAANLIRSYIGYDL---YQRPFFQNTGRFPLYTKAPGTRRANFGDDSTLGDLPGLKLGYNVRQFAGVTGNGHYQWYFDHIKADATGTEMAFYNYGWWDLNFDDLVYRHDYPQVEA
7	MUSTER	2vvmA	0.090	0.946	0.716	threading_7	MTSRQWTPETGLTQGVPSLGVISPPTNIGPWDVIYCGLTATRDLTVAGFKTLEARDRISWSSNIDGYHQSHVWREITRYKM-----HNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEA--EDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERID---QIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAAGTGRAARVTARDGREFVAKRVVCTIPLNVLST------IQFSPALS---TERISAMQAGHVSMCTKVHAEVDNKDMRSWTGIAYPFNKLC-YAIGDGTTPAGNTHLVCFGNSANHIQPDEDVRETLKAVGQLAP-FGVKRLVFHNSRPGMVSECLQGLR-EKHG
8	SPARKS	2r8va	0.096	0.866	0.832	threading_8	LEGGTL-NKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQG-RTPHYCRRVTDETSLGQAQQFAGTVRSRFEAALCGSSVPLVSGNFLTARPIG----------VIDGTDMEYAGVIRKTDTAALRFQLD----AGNIVMPPLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDG--ISRPDGTLAET---------------------------LSAQEAQSLAEHAASETRRLISSAVAALE------GGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAFVSIRQAALIRPLEEQGILLHRSREYLENHISEFSI-LEHDGNLYGCAALKTFAEADCGEIACLAVSPQAQ-DGGYGERLLAHIIDKARGIGISRLFALSTNGEWFA--ERGFTASEDE
9	PROSPECT2	2h94A	0.064	0.985	1.231	threading_9	LPHDRMTSQEAACSYLERHGLINFGIYKRIKPLMAVVSKQVNMLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASTAEFLVKSKHRDLTALCKEYDEL------AETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFESCVPVALAEGLDVRQVRYTASGCEVIAVNTRSTSQPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAENISDDVIVGRCLAILKGISAVPQPKETVVSRSSGNDYDLMAQPITPGIPR
10	PPA-I	2wpxA	0.133	0.698	0.963	threading_10	-------------------------------------------------------------------------------------------------------------AGELEFVPLAANDDETVGQWLDLMAL-----AAETGPRAAPPC------NVDMVGSLRFAPGALRLALPDGAPTARVDQLLVHP----GRRRRGIGRALWAHARELARKHDRTTLTATVVESLPSGPAQDPGPAAFAAAMGAHRSDIPAGTHQWLDLDRHDPLADGVPAVPAGYSLVTWGTITPVSELELRAAQEVRTSYARQFETMRVGRGRRAYHTGAVHTGALAGYTSVSKGNPAYALQGMTVVHREHRGHALGTLLKLANLEYVLRHEPEVRLVETADNHPMIAVNAALGFEPYDRW

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.659 to 1l5aA SCOP code=c.43.1.2	TM-score=0.418 to 1lvaA SCOP code=a.4.5.35	TM-score=0.750 to 2iidA SCOP code=c.3.1.2	TM-score=0.628 to 2r8jA SCOP code=d.240.1.1	TM-score=0.562 to 2iveA SCOP code=c.3.1.2