Template-based Modeling Results for YCAP_ECOLI

Submitted Primary Sequence

>Length 230
MKAFDLHRMAFDKVPFDFLGEVALRSLYTFVLVFLFLKMTGRRGVRQMSLFEVLIILTLGSAAGDVAFYDDVPMVPVLIVFITLALLYRLVMWLMAHSEKLEDLLEGKPVVIIEDGELAWSKLNNSNMTEFEFFMELRLRGVEQLGQVRLAILETNGQISVYFFEDDKVKPGLLILPSDCTQRYKVVPESADYACIRCSEIIHMKAGEKQLCPRCANPEWTKASRAKRVT
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKAFDLHRMAFDKVPFDFLGEVALRSLYTFVLVFLFLKMTGRRGVRQMSLFEVLIILTLGSAAGDVAFYDDVPMVPVLIVFITLALLYRLVMWLMAHSEKLEDLLEGKPVVIIEDGELAWSKLNNSNMTEFEFFMELRLRGVEQLGQVRLAILETNGQISVYFFEDDKVKPGLLILPSDCTQRYKVVPESADYACIRCSEIIHMKAGEKQLCPRCANPEWTKASRAKRVT
CCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHEEEEECCCCEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEECEEECCCCCCHHHHHCCCCHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKAFDLHRMAFDKVPFDFLGEVALRSLYTFVLVFLFLKMTGRRGVRQMSLFEVLIILTLGSAAGDVAFYDDVPMVPVLIVFITLALLYRLVMWLMAHSEKLEDLLEGKPVVIIEDGELAWSKLNNSNMTEFEFFMELRLRGVEQLGQVRLAILETNGQISVYFFEDDKVKPGLLILPSDCTQRYKVVPESADYACIRCSEIIHMKAGEKQLCPRCANPEWTKASRAKRVT
55211112100230202100000010000000000002011332133001010000000010001001233120010000000000011001001110310220031310000120100122023120212200120243313202201000011312000012333423221121223123323213322210001001002241023300321121310331323324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKAFDLHRMAFDKVPFDFLGEVALRSLYTFVLVFLFLKMTGRRGVRQMSLFEVLIILTLGSAAGDVAFYDDVPMVPVLIVFITLALLYRLVMWLMAHSEKLEDLLEGKPVVIIEDGELAWSKLNNSNMTEFEFFMELRLRGVEQLGQVRLAILETNGQISVYFFEDDKVKPGLLILPSDCTQRYKVVPESADYACIRCSEIIHMKAGEKQLCPRCANPEWTKASRAKRVT
1	MUSTER	3c6fD	0.245	0.478	1.274	threading_1	------------------------------------------------------------------------------------------------------------PNIVIRKGELQYKVMKKNKIDINQLQSMLRQAGSFSIQEVEYAIMETNGMVSVLPKSDFD-----KPTNKDMQIPSKSVSL-------PITLIIDGEIVRDNLKEAGVDEQWLKQEMKKKID
2	PROSPECT2	3hc1A	0.086	0.957	1.101	threading_2	FSGVDVLRIADPDVAIDEVADLLLDLLREAIFTCAIVDLFKTGKGPLNRSTLWAHSLGVARIAKLIATGFLNPVNVYVAGLLHDVGEVFINFFRGKEFSQVVTLVDEE------KITFGQAEERLFGTSHCEVGFALAKRWSLN-EFICDTILYHHD---IEAVPYKQAAIVAVAFADEYCTLRRLGFEGHKPVDSVRTLLENHPSWGVIRRSLGFDEKLIVAELDSSIL
3	HHPRED-l	3c6f_A	0.156	0.530	3.301	threading_3	--------------PNELQYKVMKKNKIDINQLQSMLRQAGSFSIQEVE---------------YAIMETNGM-----------------VSVL-PKSMQIPSKSVSLPITLIIDGEIVRDNLKEAGVDEQWLKQEMKKKNIDKTEDVLFAEWHKNKPLYTVTYEQSRS-------------------------------------------------------------
4	HHPRED-g	3c6f_A	0.145	0.570	2.878	threading_4	--------------PNILQYKVMKKNKIDINQLQSMLRQAGSFSIQEVE---YAIMETNGMVSVLPKSDF-DKPTNKD---------------MQI-----PSKSVSLPITLIIDGEIVRDNLKEAGVDEQWLKQEMKKKNIDKTEDVLFAEWHKNKPLYTVTYEQSRS-------------------------------------------------------------
5	SPARKS	3c6fa	0.245	0.478	2.133	threading_5	------------------------------------------------------------------------------------------------------------PNIVIRKGELQYKVMKKNKIDINQLQSMLRQAGSFSIQEVEYAIMETNGMVSVLPKSDFD-----KPTNKDMQIPSKSVSL-------PITLIIDGEIVRDNLKEAGVDEQWLKQEMKKKID
6	PROSPECT2	1m5ya	0.067	0.970	1.053	threading_6	VDKVDVDGLMQQLPDDATLRHQIMERLIMDQIILQMGQKMGVK-ISDEQLDQAIANIAKQDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRQEVESLAQQVTELNLSHILIPRAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRKGDIVGPIRSG------VGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMADIKSGKTTASWMQEQRASALS
7	PROSPECT2	3c6fA	0.227	0.478	1.663	threading_7	------------------------------------------------------------------------------------------------------------PNIVIRKGELQYKVMKKNKIDINQLQSMLRQAGSFSIQEVEYAIMETNGMVSVLPKSDFDKPTN------------KDMQIPSKSVSLPITLIIDGEIVRDNLKEAGVDEQWLKQEMKKKRS
8	PROSPECT2	1ct9a1	0.087	0.896	1.036	threading_8	RDWFDYDAVKDNVTDKNELRQALEDSVLDSSIISAITKKYALHSFPGSPDLKAAQEVAAIRDVIYHIETYDVTTIRASTPMYLMSTVRKLLALHMYDCARANKAMSAWGVEARV-------PFLDKKFLDVAMRINPQDKMCKMEKHILRECFEAYLPASVAWRQKEQFSDGVGYSWIDTLKEV-----------------AAQQVSDQQLEPTSKEAYLYREIFEELFP
9	PPA-I	3c6fD	0.245	0.478	2.543	threading_9	------------------------------------------------------------------------------------------------------------PNIVIRKGELQYKVMKKNKIDINQLQSMLRQAGSFSIQEVEYAIMETNGMVSVLPKSDFD-----KPTNKDMQIPSKSVSLP-------ITLIIDGEIVRDNLKEAGVDEQWLKQEMKKKID
10	HHPRED-l	3c6f_A	0.229	0.474	7.609	threading_10	------------------------------------------------------------------------------------------------------------PNIVIRKGELQYKVMKKNKIDINQLQSMLRQAGSFSIQEVEYAIMETNGMVSVLPKSDFD-----KPTNKDMQIPS-------KSVSLPITLIIDGEIVRDNLKEAGVDEQWLKQEMKKKN-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.337 to 2orcA SCOP code=a.35.1.2	TM-score=0.605 to 1vqrA SCOP code=a.211.1.3	TM-score=0.333 to 2orcA SCOP code=a.35.1.2	TM-score=0.344 to 1lkjA SCOP code=a.39.1.5	TM-score=0.356 to 2orcA SCOP code=a.35.1.2