Template-based Modeling Results for YCAM_ECOLI

Submitted Primary Sequence

>Length 476
MAGNVQEKQLRWYNIALMSFITVWGFGNVVNNYANQGLVVVFSWVFIFALYFTPYALIVGQLGSTFKDGKGGVSTWIKHTMGPGLAYLAAWTYWVVHIPYLAQKPQAILIALGWAMKGDGSLIKEYSVVALQGLTLVLFIFFMWVASRGMKSLKIVGSVAGIAMFVMSLLYVAMAVTAPAITEVHIATTNITWETFIPHIDFTYITTISMLVFAVGGAEKISPYVNQTRNPGKEFPKGMLCLAVMVAVCAILGSLAMGMMFDSRNIPDDLMTNGQYYAFQKLGEYYNMGNTLMVIYAIANTLGQVAALVFSIDAPLKVLLGDADSKYIPASLCRTNASGTPVNGYFLTLVLVAILIMLPTLGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAFIAVVRLAQKYKPEYVFIRNKPLAMTVGIWCFAFTAFACLTGIFPKMEAFTAEWTFQLALNVATPFVLVGLGLIFPLLARKANSK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAGNVQEKQLRWYNIALMSFITVWGFGNVVNNYANQGLVVVFSWVFIFALYFTPYALIVGQLGSTFKDGKGGVSTWIKHTMGPGLAYLAAWTYWVVHIPYLAQKPQAILIALGWAMKGDGSLIKEYSVVALQGLTLVLFIFFMWVASRGMKSLKIVGSVAGIAMFVMSLLYVAMAVTAPAITEVHIATTNITWETFIPHIDFTYITTISMLVFAVGGAEKISPYVNQTRNPGKEFPKGMLCLAVMVAVCAILGSLAMGMMFDSRNIPDDLMTNGQYYAFQKLGEYYNMGNTLMVIYAIANTLGQVAALVFSIDAPLKVLLGDADSKYIPASLCRTNASGTPVNGYFLTLVLVAILIMLPTLGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAFIAVVRLAQKYKPEYVFIRNKPLAMTVGIWCFAFTAFACLTGIFPKMEAFTAEWTFQLALNVATPFVLVGLGLIFPLLARKANSK
CCCCCCCCEEEHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAGNVQEKQLRWYNIALMSFITVWGFGNVVNNYANQGLVVVFSWVFIFALYFTPYALIVGQLGSTFKDGKGGVSTWIKHTMGPGLAYLAAWTYWVVHIPYLAQKPQAILIALGWAMKGDGSLIKEYSVVALQGLTLVLFIFFMWVASRGMKSLKIVGSVAGIAMFVMSLLYVAMAVTAPAITEVHIATTNITWETFIPHIDFTYITTISMLVFAVGGAEKISPYVNQTRNPGKEFPKGMLCLAVMVAVCAILGSLAMGMMFDSRNIPDDLMTNGQYYAFQKLGEYYNMGNTLMVIYAIANTLGQVAALVFSIDAPLKVLLGDADSKYIPASLCRTNASGTPVNGYFLTLVLVAILIMLPTLGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAFIAVVRLAQKYKPEYVFIRNKPLAMTVGIWCFAFTAFACLTGIFPKMEAFTAEWTFQLALNVATPFVLVGLGLIFPLLARKANSK
55342332201000000000000100110011103201100000000000110110000020011133241000000220212100000000000000010112020000000000212121132111000000000000000001121131131002100211111122110101012112323112220003100131112000000000000000210110033033224301300000000000010000000000011320232111100010022002101001000000000100000000000000001001230324100210032232200110000000000001000200021012002000100000000100000000000032233231301002222000000000000000000000013132112310010011000000000000001111342344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAGNVQEKQLRWYNIALMSFITVWGFGNVVNNYANQGLVVVFSWVFIFALYFTPYALIVGQLGSTFKDGKGGVSTWIKHTMGPGLAYLAAWTYWVVHIPYLAQKPQAILIALGWAMKGDGSLIKEYSVVALQGLTLVLFIFFMWVASRGMKSLKIVGSVAGIAMFVMSLLYVAMAVTAPAITEVHIATTNITWETFIPHIDFTYITTISMLVFAVGGAEKISPYVNQTRNPGKEFPKGMLCLAVMVAVCAILGSLAMGMMFDSRNIPDDLMTNGQYYAFQKLGEYYNMGNTLMVIYAIANTLGQVAALVFSIDAPLKVLLGDADSKYIPASLCRTNASGTPVNGYFLTLVLVAILIMLPTLGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAFIAVVRLAQKYKPEYVFIRNKPLAMTVGIWCFAFTAFACLTGIFPKMEAFTAEWTFQLALNVATPFVLVGLGLIFPLLARKANSK
1	MUSTER	3l1lA	0.160	0.868	2.461	threading_1	------AHKVGLIPVTLMVSGAIMGF--LPANLASTGGIAIYGWLVTIIGALG-LSMVYAKMSFLDPSP-GGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFP------ILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFG------------WFWFRGETYMA----AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSA--SPFGDAARMAL-----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLS--SISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAY--------LAVTTIAFLYCIWAVVGS--------------AKEVMWSFVTLMVITAMYALNYNRLHKNP
2	SPARKS	3l1la	0.171	0.870	5.919	threading_2	------AHKVGLIPVTLMVSGAIMGVFLLPANLASTGGIAIYGWLVTIIGALG-LSMVYAKMSFLDPSP-GGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK------DPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAV------------FGWFWFRGETYMA----AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSA--SPFGDAARMAL-----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQL--SSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAY---------------LAVTTIAFLYCIW--AVVGSG------AKEVMWSFVTLMVITAMYALNYNRLHK
3	PROSPECT2	3gi8C	0.131	0.901	2.252	threading_3	MELKNKK--LSLWEAVSMAVGVMIGFSIFGVGAKIAGRNLPETFILSGIYALL-VAYSYTKLGAKIVSN-AGPIAFIHKAIGDNIITGALS--ILLWMSYV---ISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVALLILGLFIFAGLITIHPSYVIPDLAPSAVSGM--------IFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDEL-IKASENALAVAAKPFL-----GNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFK-STEGLYITSALGVLFALLFN---------MEGVASITSAVFMVIYLFVILSHYILIDEVGGRKE-----------IVIFSFIVVLGVFLLLLYYQ---WITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFSNNKS
4	PPA-I	3l1lA	0.169	0.870	7.377	threading_4	------AHKVGLIPVTLMVSGAIMGSGLLPANLASTGGIAIYGWLVTIIGALG-LSMVYAKMSFLDPSP-GGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI------LKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFG------------WFWFRGETYMA----AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSA--SPFGDAARMAL-----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLS--SISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAY--------LAVTTIAFLYCIWAVVGSG---------------AKEVMWSFVTLMVITAMYALNYNRLHK
5	HHPRED-l	3l1l_A	0.155	0.870	8.598	threading_5	------AHKVGLIPVTLMVSGAIMGSGVFLANLASTGGIAIYGWLVTIIG-ALGLSMVYAKMSFLDPS-PGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI------LKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYM---AA-------------IQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRV--SASPFGDAARMAL-----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLS--SISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF--GKARPA------YLAVTTIAFLYCIWAVVG----------SGAK-EVM--WSFVTLMVITAMYA-LNYNRLHK-
6	HHPRED-g	3l1l_A	0.162	0.870	7.340	threading_6	------AHKVGLIPVTLMVSGAIMGSGVFLANLASTGGIAIYGWLVTIIG-ALGLSMVYAKMSFLDPS-PGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYF-FP-----ILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGW--FWFRGETY-MAA-------------IQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVS--ASPFGDAARMAL-----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQ-LSSI-SPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF--GKARP------AYLAVTTIAFLYCIWAVVG---------SG--AKEVM----WSFVTLMVITAMYALNYNRLHK
7	SP3	3ob6a	0.165	0.880	4.872	threading_7	----ADAHKVGLIPVTLMVSGNIMGF-LLPANLASTGGIAIYGWLVTIIGALG-LSMVYAKMSFLDPSP-GGSYAYARRCFGPFLGYQTNVLYWLACWIGAIAMVVIGVGYLSYFFPILK------DPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWF---RGETYMAAWN---VSGLGTFGAIQSLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAAL--RVSASPFGDAARMA-----LGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQL--------SSISPGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYL--------AVTTIAFLYCIWAVV---------GSG------AKEVMWSFVTLMVITAMYALNYNRLHK
8	SAM-T99	3l1lA	0.148	0.882	8.334	threading_8	------AHKVGLIPVTLMVSGAIMGSGVFLLPALASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPS-PGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFF------PILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFR----------------GETYMAAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVS--ASPFGDAARMALG-----DTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQL--SSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGH----------FGKARPAYLAVTTIAFLYCIWAVVGSGAKEVMW------SFVTLMVITAMYALNYNRLHKNPYPLDA--
9	MUSTER	3gi9C	0.139	0.878	2.274	threading_9	M--ELKNKKLSLWEAVSMAVGVMIGF--SIFGVGAKGRNLPETFILSGIYALL-VAYSYTKLGAKIVSN-AGPIAFIHKAIGDN--IITGALSILLWMSYVIS-IALFAKGFAGYFL---PLIAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLI------------TIHPSYVIPDLASGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASEN-----ALAVAAKPFL-GNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFK-STEGLYITSALGVLFALLF----------MEGVASITSAVFMVIYLFVILSHYILIDEVG---------GRKEIVIFSFIVVLGVFLLLLYYQW--------ITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFSN
10	SPARKS	3ob6a	0.151	0.874	5.445	threading_10	----ADAHKVGLIPVTLMVSGNIMGVFLLPANLASTGGIAIYGWLVTIIGALG-LSMVYAKMSFLDPSP-GGSYAYARRCFGPFLGYQTNVLYWLACWIGAIAMVVIGVGYLSYFFPILK------DPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFW------------FRGETYMAAWNFGAIQSLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSA--SPFGDAARMAL-----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQL--------SSISPGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYL-----------AVTTIAFLYCIWAV------VGSG----AKEVMWSFVTLMVITAMYALNYNRLHKNP

Predicted Tertiary Structure


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TM-score=0.674 to 2q6hA SCOP code=f.54.1.1	TM-score=0.686 to 2q6hA SCOP code=f.54.1.1	TM-score=0.678 to 2q6hA SCOP code=f.54.1.1	TM-score=0.703 to 2q6hA SCOP code=f.54.1.1	TM-score=0.676 to 2q6hA SCOP code=f.54.1.1