Template-based Modeling Results for YBJS_ECOLI

Submitted Primary Sequence

>Length 337
MKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPSGRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAWLRDHGKLPR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPSGRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAWLRDHGKLPR
CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPSGRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAWLRDHGKLPR
1100000000000100011004311101000123211311432101001010011200101122210000000002121202231012000200210021023220200000001000131333331333131332113101010001200110032234020000101011013132000100200231121100111200000000010010000002200332320100000222211021002100320413132220020001000100220033133322112200120122000002200420212021212200220011023223234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPSGRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAWLRDHGKLPR
1	MUSTER	1r66A	0.228	0.896	2.667	threading_1	MRLLVTGGAGFIGSHFVRQLLAGAYSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELR--GVDAIVHFAAESHVDRSASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTDEVYGSIDS--GSWTESSPLEPNSPYAASKAGSDLVARAYHRTY-GLDVRITRCCNNYGPYQEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLA----GGRAGEIYHIGGGLELTNRELTGILLDSLGADW----------SSVRKVADRKGHD----------------LRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENGWWEP
2	SPARKS	2pk3a	0.181	0.884	3.485	threading_2	MRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNE----AKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSKKGTFSTNVFGTLHVLDAVRDSNLCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAY-GMDIIHTRTFNHIGPGQGFVTQDFAKQIVDIEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQY----GKTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTE---------LNPLQLRPSE----------------VPTLIGSNKRLKDSTGWKPRIPLEKSLFEILQSYRQA-----
3	PROSPECT2	2v6fA	0.132	0.964	3.270	threading_3	SVALIVGVTGIIGNSLAEILPLADTKVYGVARRT------RPNPINYVQCDISDPDD--SQAKLSPLTDVTHVFYVTWANSTEQENCEANSKMFRNVLDAVIPPNLKHISLQTGRKHYMGPFEIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSLCVYAAICKHEGKVLRFTGCWDGYSDCSDADLIAEHHIWAAVDPY---AKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGQDLMKGKEPVWEEIVRENGLTPTIWWFGDVILGNECFLDSMNKSKEHGFLGFRNSKNAFISWIDKAKAYKIVP-
4	PPA-I	1r66A	0.225	0.896	2.943	threading_4	MRLLVTGGAGFIGSHFVRQLLAGAYSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELR--GVDAIVHFAAESHVDRSASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTDEVYGSIDS--GSWTESSPLEPNSPYAASKAGSDLVARAYHRTY-GLDVRITRCCNNYGPYQEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGG----RAGEIYHIGGGLELTNRELTGILLDSLGADWSS----------VRKVADRKGH----------------DLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENRGWWE
5	HHPRED-l	1z7e_A	0.179	0.947	1.727	threading_5	TRVLILGVNGFIGNHLTERLLREDHEVYGLDIGSDASRFLNHPHFHFVEGDISIHSEWIE-YHVKKCDVVLPLVAIATPIRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKY-FDEDGPVNKPRWIYSVSKQLLDRVIWAYGEKE-GLQFTLFRPFNWMGPRLDRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAG-NRCDGEIINIGNPEEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQ-D-----------VEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT-
6	HHPRED-g	1kew_A	0.204	0.929	1.804	threading_6	MKILITGGAGFIGSAVVRHIIKNTDTVVNIDKLTYAGNLEESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSPAAFIETNIVGTYALLEVARKYWNFRFHHISTDEVYGDLPHPDPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY-GLPTIVTNCSNNYGPYHEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVV----TEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKAT---SYREQITYVADRPGH----------------DRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANQWVNN
7	SP3	2pk3a	0.181	0.884	3.668	threading_7	MRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNE----AKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSKKGTFSTNVFGTLHVLDAVRDSNLCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAY-GMDIIHTRTFNHIGPGQGFVTQDFAKQIVDIEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQY----GKTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTE---------LNPLQLRPSE----------------VPTLIGSNKRLKDSTGWKPRIPLEKSLFEILQSYRQA-----
8	SAM-T99	1r66A	0.225	0.896	2.817	threading_8	MRLLVTGGAGFIGSHFVRQLLAGADEVIVLDSRANLAPVDADPRLRFVHGDIRDAGLLAR--ELRGVDAIVHFAAESHVDAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTDEVYGSIDSG-SWTESSPL-EPNSPYAASKAGSDLVARAYHRTY-GLDVRITRCCNNYGPYQHPLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLA----GGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVR----------KVADRKG----------------HDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENRGWWE
9	MUSTER	2hunA	0.227	0.887	2.523	threading_9	MKLLVTGGMGFIGSNFIRYILEKHDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRK--VDGVVHLAAESHVDRSPEIFLHSNVIGTYTLLESIRRENPVRFVHVSTDEVYGDILKGS--FTENDRLMPSSPYSATKAASDMLVLGWTRTY-NLNASITRCTNNYGPYQEKLIPKTIIRASLGLKIPIYG---TVRDWLYVEDHVRAIELVLL----KGESREIYNISAGEEKTNLEVVKIILRLMGKGE----------ELIELVEDRPGH----------------DLRYSLDSWKITRDLKWRPKYTFDEGIKKTIDWYLKNWWWKP
10	SPARKS	2pzka	0.154	0.884	3.338	threading_10	MRILITGGAGCLGSNLIEHWLPQGHEILVIDNFAKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPA--TVPIPIDSPTAPFTSYGISKTAGEAFLMM-----SDVPVVSLRLANVTGPRAIGPIPTFYKRLKAGQKCFCSD---TVRDFLDMSDFLAIADLS----LQEGRPTGVFNVSTGEGHSIKEVFDVVLDYVGATLAEP---------VPVVAPGADD----------------VPSVVLDPSKTETEFGWKAKVDFKDTITGQLAWYDKYGVTDI

Predicted Tertiary Structure


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TM-score=0.907 to 1r66A SCOP code=c.2.1.2	TM-score=0.909 to 1r66A SCOP code=c.2.1.2	TM-score=0.867 to 1rpnC SCOP code=c.2.1.2	TM-score=0.732 to 1rpnC SCOP code=c.2.1.2	TM-score=0.905 to 1r66A SCOP code=c.2.1.2