Template-based Modeling Results for YBJL_ECOLI

Submitted Primary Sequence

>Length 561
MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGMESRQLSLALDNLSLGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAYRVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYPDAHARLDPSFRNGKEVFDRDLLDMRIVTEEVVVKNHNAVGKRLAQLKLTDHGCFLNRVIRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFVIGLMIGMITFQFSTFSFGMGNAAGLLFAGIMLGFMRANHPTFGYIPQGALSMVKEFGLMVFMAGVGLSAGSGINNGLGAIGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALLFGAMMGARTCAPAMEIISDTARSNIPALGYAGTYAIANVLLTLAGTIIVMVWPGLG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGMESRQLSLALDNLSLGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAYRVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYPDAHARLDPSFRNGKEVFDRDLLDMRIVTEEVVVKNHNAVGKRLAQLKLTDHGCFLNRVIRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFVIGLMIGMITFQFSTFSFGMGNAAGLLFAGIMLGFMRANHPTFGYIPQGALSMVKEFGLMVFMAGVGLSAGSGINNGLGAIGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALLFGAMMGARTCAPAMEIISDTARSNIPALGYAGTYAIANVLLTLAGTIIVMVWPGLG
CEECHHHHHHHCHHHHHHHHHHHHHHHCCEEEECEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHCCCCCCCCHHHHHHHHCCCEEEEEEEECCEEECCCCCCEECCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCHHHCCCCHHHHCCCCCCEEEEEEEECCEECCCCCCCEEECCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGMESRQLSLALDNLSLGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAYRVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYPDAHARLDPSFRNGKEVFDRDLLDMRIVTEEVVVKNHNAVGKRLAQLKLTDHGCFLNRVIRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFVIGLMIGMITFQFSTFSFGMGNAAGLLFAGIMLGFMRANHPTFGYIPQGALSMVKEFGLMVFMAGVGLSAGSGINNGLGAIGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALLFGAMMGARTCAPAMEIISDTARSNIPALGYAGTYAIANVLLTLAGTIIVMVWPGLG
300100211210010000000000000010201001001000000000000213020221011000000000000200220021024212200000000000000000000200111101000000001100110000020043122323211211111100000010000000000020013023331321022114322232323332221101002001321122312203101213321000110213121101223210231000001012300120121133233223332231201111000222311133012021231100001011231311123312013000000002231032002201322241321100000000000000010203012011111100000000000010222121101013000100320000000000001002100200232112011001001001100000000100201100000000002001100200031041211000000000001000000000000001215
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGMESRQLSLALDNLSLGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAYRVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYPDAHARLDPSFRNGKEVFDRDLLDMRIVTEEVVVKNHNAVGKRLAQLKLTDHGCFLNRVIRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFVIGLMIGMITFQFSTFSFGMGNAAGLLFAGIMLGFMRANHPTFGYIPQGALSMVKEFGLMVFMAGVGLSAGSGINNGLGAIGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALLFGAMMGARTCAPAMEIISDTARSNIPALGYAGTYAIANVLLTLAGTIIVMVWPGLG
1	MUSTER	1b3uA	0.117	0.911	0.868	threading_1	IAV-LIDELRNDVQLRLNSIKKLSTIA--------ALGVRTRSELLPFLTDTIYDE-DEVLLALAEQLGTFTVGVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG---WFTSRTSACGLFSVCRVSSAVKAELRQYFRNLCS-TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNL---SDEQDSVRLLAVEACVNIAQLLPQLEALVMPTLRQAAEDK---WRVRY----------MVADKTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC--ENLSADCRENVIMSQLPCIKELVSDANQHVKSALASVI--MGLSPILGKDNTIEHLLPLFLAQLK--DECPEVRLNIISNLDCVNEVIGIR----------QLSQSLLPAIVELAEDAKAIIEYMPLLAGQLEKLNSLCMAWYAIREAATSNLKKLVEKFG----KEWAHATIIPKVLAMSGDNYLHRMTTLFCINVLSEVCGTKHMLPTVLRMAGDPVANVRFNVAKSLQKINSTLQSEVKPILEKLTQ
2	SPARKS	1lnqa	0.140	0.485	0.905	threading_2	------------------------------------------------------------------------------------------PATRILLLVLAVIIYGTAGFHFIEGESLYWTFVTIATYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLRHVVICGWSESTLECLRELRGSVFVLAEDENVRKKVLRSGTRVSDLEKANVRGARAVIVDLESDSETI-HCILGIRKIDESVRIIAEAERYEQLRMAGADQ----------VISPFVISGRLMSRSIDDGQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDTGVIIIGVGRGDELIIPPRDYSFRAGDIILGIGKPEEIERLKNYISA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	1jdha	0.104	0.838	2.038	threading_3	AVVNLTKLLNEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN---DVETARCTAGTLHN---LSHHREGLLAIFKSGGIPALVKMLDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMEKLLWTTSRVLKVLSVCSSNKPAIVEMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ----------------------LLGSDD-------INVVTCAAGILSNLTCNNYKNKM---------MVCQVGGIEALVRTVLRAGDREDI-----------------------------TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK----------LLHPPSHWPLIKATVGLIRNLALC-------PANHAPLREQGAIPRLVQL-LVRAHQDTQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENVAAGVLCELAQDKEAAEAIEAEGATAPLTELLVATYAAAVLFRMS
4	PPA-I	2bkpA	0.141	0.342	1.789	threading_4	------------------------------------------------------------------------------------YEPKSVKEIFIEMKDTVELMVDLAYASLLFG-DKEIAEEVLELEERIDLLNYQLMMHSVLAARNVKEAEQVITILQIANAIEDISNAAGDLAKMVLEG----VELHPVIKETILEGE-------------EIIGKIQVYPESVIVGKTLGELDLATNTGVWIIAVRRGKRWIFPNENFKIRAGDVLIGRGTRTSIDHLKEIARGAIRVIG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	HHPRED-l	1vct_A	0.157	0.330	2.627	threading_5	--------------------------------------------------------------------------------------PKSVKEIFIEMKD-TVELMVDLAYASLLFGDKEIAEEVLE-----------LEERIDLLNYQ--LMMHSVLAARNVKEAEQVI---TILQIANAIEDI-----SN--------------------------------------------------------------------------------------AAGDLAKMVLEGVELHETILEGEEIIGKIQVYPESVIVGKTLGELDLANTGVWIIAVRRGKRWIFPNENFKIRAGDVLIGRGTRTSIDHLKEIARGAIRVIG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6	HHPRED-g	3jxo_A	0.205	0.148	2.125	threading_6	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NLYFQGMIPLEQGIEFLSVNVEEDPVVGKKLKDLPLP-RDSIIAAIVRGGVLVVPRGDTEILSGDKLYVIVSAEAKETVEETLL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	SP3	2bkub	0.074	0.982	0.566	threading_7	VSPEAKNQIKTNALTAPRIANAAAQLIAAI--ADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAEVQAAAFGCLCKIEQALYALTIATNDKVASMTVEFWSTICEEEIDIAYELAFALSSIKDVVPNLLNLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA--ESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV----AETSASISTFVMDKLGQTMSVDENQL-TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKAFIEDDVFYAISALAASLGSPYLLKALNQVDSPITAVGFIADISNSLEEDFRSDAMMNVLAQLKPAVLSVFGDIASNIG
8	SAM-T99	3l4bC	0.133	0.296	1.720	threading_8	--------------------------------------------------------------------------------------------------------------------------------------------------------------MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEE-----------------FAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRD-----------------------------EVNLFIAQLDEFSSIIPLEQGIEFLSVNVEDSPVVGKKLKDLPLP-RDSIIAAIVRGGVLVVPRGDTEILSGDKLYVIVSAEAKETVEETL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	3o7pA	0.122	0.713	0.811	threading_9	----------RSYIIPFALLCSLFFLWA-----------VANNLNDILLP-QFQQAF----FQAGLIQSAFYFGY-IPIPAGILMKKLSKAGIITGLFLYALGAALFWPAAEIMNY-TLFLVGLFIIAAGLGCLETAANPFVTVLGPE--------SSGHFRLNLAQTFASFGAIIAVVFGQSLILSNVPHQSQDVLDKM-------------------------------SPEQLSAYKHSLV--------LSVQTP--------------MIIVAIVLLVALLIMLTKFPALQSDNHSD--------AKQGSFSASLSRLARIRH---------------------WRWA-VLAQVGAQTACWSYLIRYAVEEIPGMT---AGFAANYLTGTMVCFF--------------IGRFTGTWLISRF----------APHKVLAAYALIAMALCLISAFAGGHVGLIALT---LCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMGFVSDAAGN----IPTA-------ELIPALCFAVIFIFARFR
10	SPARKS	1lnqa1	0.133	0.348	0.850	threading_10	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------ICGWESTLECLRELRGSEVDENVRKKVLRSGARVSDLEKANVRGARAVIVDLESDSETI-HCILGIRKIDESVRIIAEAERYENI-----EQLRMAG--ADQVISPFVISGRLMSRSIDDGQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDTGVIIIGVGRGDELIIPPRDYSFRAGDIILGIGKPEEIERLKNYISA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.829 to 1b3uA SCOP code=a.118.1.2	TM-score=0.863 to 1b3uA SCOP code=a.118.1.2	TM-score=0.468 to 2bkpA SCOP code=a.7.12.1	TM-score=0.638 to 1xm9A SCOP code=a.118.1.24	TM-score=0.639 to 2bkpA SCOP code=a.7.12.1