Template-based Modeling Results for YBJE_ECOLI

Submitted Primary Sequence

>Length 299
MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
21100000000000010031233200300220000000000000001012132012101100000000000000000000000130122323333342212120002001000000000000000111122021001000000000000203231211310111130000000100010000000010131212100000110000000000002000110000000010021000000000003202010000000000000000013113210000000100000000100111105
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
1	MUSTER	3zuxA	0.112	0.923	1.050	threading_1	GKTFSLWAALFAAAAFFAP----DTFKWAGPYIPWLLGIIMFGMGLTL-KPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLL----------NLP---AEIAVGVILVGCCTASNVMTYLARGNVAVTSVSTLTSPLLTPAIFLMLAGEM----LEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKDALPLVSVAAIV-LIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPALTIVGMQNSGLAAALAAAHFAPVVAVPGALFSVWHNISGSLLATYWAA
2	SPARKS	2xwub	0.103	0.940	1.070	threading_2	QYESLKAQLFTQITR--FASGSKIVLTRLCVALASLALSMMP------DAWPCAVADMVRLFQAPVDGQGRCLALLELLTVLPEEFQTSRLPQYR------KGLVRTSLAVECGAVFPLLEQLLQQP--SSPSCVRQKVLKCFSSWVEVPLQDCEALIQAAFAAFDSSVEAIVNAISQPDAQRYVNTLLKLGLQEQLRQAVQNGTSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHY--PVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDV
3	PROSPECT2	1ejlI	0.100	1.000	1.606	threading_3	IVKGISQLQATQAARKLLSREKQPPIDNIIRPIQFESAWALTNIQTKAVVDGGAIPAFAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLILPTLVRLLHHNDPEVLADSCWAISYLRIEMVVKKGVVPQLVKLTELPIVTPALRAIGNIEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSEQIVYLVIEPLMNSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQIEKYFS
4	PPA-I	3zuxA	0.109	0.950	1.583	threading_4	GKTFSLWAALFAAAAFFAPDTFKWAGPY----IPWLLGIIMFGMGLTL-KPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLL----------NLPAEIAVGVILVGCCPGGTASNVMTYLARGNVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPALTIEVGSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAA
5	HHPRED-l	3zux_A	0.140	0.789	0.972	threading_5	GKTFSLWAALFAAAAFFAPDTFK----WAGPYIPWLLGIIMFGMGLTLKP-SDFDILFKHPKVVIIGVIAQFAIMPATAWCLS-KLLNLPAATYLARGNVALSVAVTMMSIVKMVLLPIVLGLIVHKVLGSTPLVSVAAIVLII---GAVVGASKGKIME--SGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIGMQNSGLAAALAAAHFAPVVAVPGALFSVWHNISGSLLATYWAAKA----------------------------------------------------
6	HHPRED-g	3zux_A	0.134	0.776	1.816	threading_6	ILSFSLWAALFAAAAFFAPDTFK----WAGPYIPWLLGIIMFGMGLTLKPSD-FDIHPKVVIIGVIAQFAITSVSTLLLTPAIFLMLAG----EMLEIQ-AAGMLMSIVMVLLPIVLGLIVHKVLGSKTEKLPLVSVAAIVLI---IGAVVGASKGKIME--SGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIGMQNSGLAAALAAAHFAPVVAVPGALFSVWHNISGSLLATYWAAKA----------------------------------------------------
7	SP3	1nnja	0.171	0.839	0.913	threading_7	LVETVRRELEKRIVGQKIIATYPRMV------LTGFEQLKKELTGKTIQGISRRGKYL--IFEIGDDFRLISHLRMEGKYRLATLDAPREKHD-------HLTMKFADGQLIYADVRKF--GTWELIS------TDQVLPYFLKKKIGPEPTYEDFDEKLFREKLRKSTKK------------IKPYLLEQTL---VA---GLGIYVDEVLWLAKIHPEKETNESSIHLLHDSIIEILQKAIKLGGSSIAL-GSTGK--MQNELQVYGK-TGE---KCSRCGAEIQKIKVAGRGTHFCP
8	SAM-T99	2eqkA	0.169	0.258	0.586	threading_8	---------------------------------------------------------------------GSSGSSGMIAAYENSKWEPVKDMHCAVKIQDKNQWRRGQI----------------------IRMVTDTLVEVLLYDVGVELVVNVDCLRKLEENLKTM-----------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	3g61A4	0.076	0.963	0.829	threading_9	LAISPVLGLSAGIWAKILSSKELHAYAKAGAVIRTVIAKELERYNNNLEEA-GIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSLDEDVPPASFWRILKLNSTEWPFVVGIFCAIIN-------GGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIKTPEIDSY---
10	SPARKS	2bkub	0.084	0.913	1.016	threading_10	QRTYYVHQALPSILNLMNDQSLETTAWCIGRIADSVAESI---------DPQQHLPGVVQACLIGLQHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADFFRLLEKKD-------SAFIEDDVFYAISALAASLGKGFEKYLETF-SPYLLKALNQVDSPV--SITAVGFIADISNSLEEDFRRY-------SDAMMNVLAQMISN

Predicted Tertiary Structure


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TM-score=0.417 to 1pw4A SCOP code=f.38.1.1	TM-score=0.432 to 2nxpA SCOP code=d.379.1.1	TM-score=0.609 to 1u6gC SCOP code=a.118.1.2	TM-score=0.722 to 1wa5B SCOP code=a.118.1.1	TM-score=0.420 to 1pw4A SCOP code=f.38.1.1