Template-based Modeling Results for YBJD_ECOLI

Submitted Primary Sequence

>Length 552
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRMAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRMAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
CEEEEEEEECCCCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCEECCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHEEECCCCCEEEEEEECHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCHHHCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRMAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
210120202104001202020330000003222010000100000012323223123310111113233322200000001222323220311210120102134322100010203112322110010012331221213101210320131121122221310221210211222102101310110022112222321112023002101210110012212232323212331233331132122122213422121110000000000020102232333210000021131301220011012103312211000121120021122210000022223110121222212231022011103122020021300000213211100310032022313221010010131002100200340202000001013212310100111033333232320110222201200022001200220030233122223200220043222220011001101432232012002200210121132334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRMAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
1	MUSTER	3qktA	0.181	0.571	1.048	threading_1	MKLERVTVKNFRSHSDTVVEFKEINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTK------VGARDTYIDLIFEK----------------------DGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLSDEAREKVVREVLNLDKFETAYKKLSSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEG-KYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLA------GEISLLILDEPTPYLDEERRRKLITIMERYLKQVILVSHDEELKDAA--DHVIRISLENGSSKVEVVS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2	PROSPECT2	1w36B1	0.106	0.908	1.740	threading_2	MS------DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLG-----------GSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHEL------------RIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAACQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPAPPPDIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALYRIFRRIWHHQPETALLLIGDPKQAIYAFRIFTYMKARSEVHAHYTLDFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQLQAGQRGEALLMNGDDAR------------PVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDRLESDKHLVQIVTIHKDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYAPLVRRRGD----------KKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDAQTGDNQ
3	PROSPECT2	1gw5b	0.089	0.875	1.491	threading_3	SKY--------------------------FTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRARTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDALSEISESHPNSNLLDLNPQNINKLLTALNE-----CTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLLLSGEPEVQYVALRNINLIVQKRPE-----ILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFV-------------RKAVRAIGRCAIKVEQS------------AERCVSTLLDL------IQTKVNYVQEAIVVIRDIFRKYPNKYESIIATLCEN-LDSLDEPDARAAMIWIVGEYAERID-NADELLESFLEGFHDELTLLTAIVKLFLKKPSETQELVQQVLTLLDELICHIGS
4	SPARKS	2o5va	0.144	0.630	2.796	threading_4	VRLSALSTLNYRNLAPGTLNFPEVTGIYGENGAGKTNLLEAAYLALT--GQTDAPRIEQLIQAGETEAYVRADLQQSLSIQEVGLGRGRRQLKVDGVRARTGDLPRGGAVWIRPEDSELVFGPPSGRRAYLDSLLSRLSARYGEQLSRYERTVSQRNAALRGGEEWAMHVWDDVLLKLGTEIMLFRRRALTRLDELAREANAQRKTLALTLTESTSPETYAADLRGRRAEELARGSTVTHRDDLLLTLGDFPASDYASRGEGRTVALALRRAELELLREKF---GEDPVLLLDDFTAELDPHRRQYLLDLAASVP-QAIVTGTE------LAPGAALTLRAQAG--RFTPVADEEMQAEGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	PROSPECT2	1b3ua	0.098	0.920	1.487	threading_5	A---------------------------AADGDDSLYPIAVLIDELRNEDVALALGVERTRSETIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAK------VLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRL---AIIEYMPLLAGQLG--------VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQD
6	PPA-I	3qktA	0.152	0.594	1.268	threading_6	MKLERVTVKNFRSHSDTVVEFKEINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAIL----ESDEAREKVVREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAR-------EAALSKIGELASEIFAEFTE-----GKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLA------GEISLLILDEPTPYLDEERRRKLITIMERYLKQVILVSHDEELKDAA--DHVIRISLENGSSKVEVVS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	HHPRED-l	1e69_A	0.151	0.469	3.333	threading_7	MRLKKLYLKGFKSFGRSLIGFSDVTAIVGPNGSGKSNIIDAIKWVFGE--------KFDMIFAGSENLPPAGSAYVELVFEENGEEITV-------ARELKR--TGENTY--YLNGSPVRLKD--IRDRFAGTGLGVDFY--------SIVGQGQIDRIVNA------------------------------------------YQRVNESFNRFISLLFFGGEGRL-------------EISIRKPGRRDQKLSLLSGGEKALVGLALLFALM--------EIKPSPFYVLDEVDSPLDDYNAERFKRLLKENHTQFIVITHNKIVMEAAD--LLHGVTMVNGVSAIVPVEV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8	PROSPECT2	1w63A	0.088	0.884	1.480	threading_8	M-------PAPIRLRELIRTIRTARSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCM----------------GSSEMCRDLAGEVEKLLKCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVRLLRILGRNDDDSSEAMNDILAQVTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILFLLNNDKNIRYVALTSLLKTVQTDHNAVCLKDLDVSIKRRAME-------------LSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAPSKRWHIDTIMRVLTTAGSYV-------RDDAVPNLIQLITNS----------VEMHAYTVQRLYKAILGD-----------YSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPLDILESVLISNMSTSVTRGYALTAIMKTRFTCTVNRIKKVVSIYALFKKYDHK
9	HHPRED-g	1e69_A	0.167	0.467	3.686	threading_9	MRLKKLYLKGFKSFGRSLIGFSRVTAIVGPNGSGKSNIIDAIKWVFGE--------KFDMIFAGSENLPPAGSAYVELVFEENGEEIT---------------------VA----RELKRTGE---NTYYL--NGSPVRLKDIRDRFAGGLGV-DFYSIVGQGQIDR--------IVNA-------------------------YQRVNESFNRFISLLFFGGEGRL-------------EISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIK--------PSPFYVLDEVDSPLDDYNAERFKRLLKENHTQFIVITHNKIVMEAAD--LLHGVTMVNGVSAIVPVE-----V--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	SP3	2o5va	0.157	0.625	2.505	threading_10	VRLSALSTLNYRNLAPGTLNFPEVTGIYGENGAGKTNLLEAAYLALT--GQTDAPRIEQLIQAGETEAYVRADLQQSLSIQEVGLGRGRRQLKVDGVRARTGDLPRGGAVWIRPEDSELVFGPPSGRRAYLDSLLSRLSARYGEQLSRYERTVSQRNAALRHVWDDVLLKLGTEIMLFRRRALTRLDELAREANAQLGSRKTLALTLTESTSPETYAADLRG---RRAEELARGSTVTGPHRDDLLLTLGDFPADYASRGEGRTVALALRRAELELLREKF---GEDPVLLLDDFTAELDPHRRQYLLDLAASV-PQAIVTGTELAPGAA------LTLRAQAG--RFTPVADEEMQAEGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.554 to 1w1wB SCOP code=c.37.1.12	TM-score=0.544 to 1w36E SCOP code=c.37.1.19	TM-score=0.599 to 1w1wB SCOP code=c.37.1.12	TM-score=0.606 to 2vglB SCOP code=i.23.1.1	TM-score=0.889 to 1b3uA SCOP code=a.118.1.2