Template-based Modeling Results for YBIX_ECOLI

Submitted Primary Sequence

>Length 225
MMYHIPGVLSPQDVARFREQLEQAEWVDGRVTTGAQGAQVKNNQQVDTRSTLYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVRSHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCVTPVTRGVRVASFMWIQSMIRDDKKRAMLFELDNNIQSLKSRYGESEEILSLLNLYHNLLREWSEI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MMYHIPGVLSPQDVARFREQLEQAEWVDGRVTTGAQGAQVKNNQQVDTRSTLYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVRSHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCVTPVTRGVRVASFMWIQSMIRDDKKRAMLFELDNNIQSLKSRYGESEEILSLLNLYHNLLREWSEI
CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCHHHCCCCCEEEECCCCCCCCEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCEEEEEECCCCCCEEEEECCEEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MMYHIPGVLSPQDVARFREQLEQAEWVDGRVTTGAQGAQVKNNQQVDTRSTLYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVRSHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCVTPVTRGVRVASFMWIQSMIRDDKKRAMLFELDNNIQSLKSRYGESEEILSLLNLYHNLLREWSEI
210101111133102201310350312204122121012022232032422102100210130023011010000122011100010243221110010002122432211010000000122221310100021122222020320100000011121002013110000000021113233111001200200220133223232011002001000211235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MMYHIPGVLSPQDVARFREQLEQAEWVDGRVTTGAQGAQVKNNQQVDTRSTLYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVRSHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCVTPVTRGVRVASFMWIQSMIRDDKKRAMLFELDNNIQSLKSRYGESEEILSLLNLYHNLLREWSEI
1	MUSTER	3dkqA	0.518	0.969	3.546	threading_1	L-IEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAA-TTRKRNQQLDKDDPVAVALGQQI-DRLLAHPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTPDG--IRTDLSATLFLSEPENYQGGELVIQDTYGQQSIKLSAGSLVLYPSSSLHQVTPVLSGERTAAFWL-QS-VRDEGQRRLLFQLDQSIQSLTAQTAAEQELFNLSGVYHNLLRRWSEL
2	SPARKS	3dkqa	0.507	0.973	5.892	threading_2	GLIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAATT-RKRNQQLDKDDPVAVALGQQIDR-LLAHPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTPDG--IRTDLSATLFLSEPENYQGGELVIQDTYGQQSIKLSAGSLVLYPSSSLHQVTPVLSGE-RTAAFWLQS-VRDEGQRRLLFQLDQSIQSLTAQTAAEQELFNLSGVYHNLLRRWSEL
3	PROSPECT2	3dkqA	0.516	0.973	4.060	threading_3	GLIEIPNVFSKQEVSHLREQLDARRWIDGNQTSG-AATTRKRNQQLDKDDPVAVALGQQI-DRLLAHPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTPDGI--RTDLSATLFLSEPENYQGGELVIQDTYGQQSIKLSAGSLVLYPSSSLHQVTPVLSGERTAAF-WLQS-VRDEGQRRLLFQLDQSIQSLTAQTAAEQELFNLSGVYHNLLRRWSEL
4	PPA-I	3dkqA	0.507	0.973	7.736	threading_4	GLIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAATT-RKRNQQLDKDDPVAVALGQQID-RLLAHPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTPDG--IRTDLSATLFLSEPENYQGGELVIQDTYGQQSIKLSAGSLVLYPSSSLHQVTPVLSGERTAAFWL--QSVRDEGQRRLLFQLDQSIQSLTAQTAAEQELFNLSGVYHNLLRRWSEL
5	HHPRED-l	3dkq_A	0.530	0.964	9.179	threading_5	-LIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGA-ATTRKRNQQLDKDDPVAVALGQQI-DRLLAHPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTPD-G-IRTDLSATLFLSEPENYQGGELVIQDTYGQQSIKLSAGSLVLYPSSSLHQVTPVLSGERTAAF-WLQS-VRDEGQRRLLFQLDQSIQSLTAQTAAEQELFNLSGVYHNLLRRWSE-
6	HHPRED-g	3dkq_A	0.528	0.969	9.181	threading_6	-LIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGA-ATTRKRNQQLDKDDPVAVALGQQI-DRLLAHPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTPD-G-IRTDLSATLFLSEPENYQGGELVIQDTYGQQSIKLSAGSLVLYPSSSLHQVTPVLSGERTAAF-WLQS-VRDEGQRRLLFQLDQSIQSLTAQTAAEQELFNLSGVYHNLLRRWSEL
7	SP3	3dkqa	0.507	0.973	5.668	threading_7	GLIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAATT-RKRNQQLDKDDPVAVALGQQIDR-LLAHPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTPD--GIRTDLSATLFLSEPENYQGGELVIQDTYGQQSIKLSAGSLVLYPSSSLHQVTPVLSGE-RTAAFWLQS-VRDEGQRRLLFQLDQSIQSLTAQTAAEQELFNLSGVYHNLLRRWSEL
8	SAM-T99	3dkqA	0.521	0.964	6.901	threading_8	-LIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAATTR-KRNQQLDKDDPVAVALGQQI-DRLLAHPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTPDG---RTDLSATLFLSEPENYQGGELVIQDTYGQQSIKLSAGSLVLYPSSSLHQVTPVLSGERTAA-FWLQS-VRDEGQRRLLFQLDQSIQSLTAQTAAEQELFNLSGVYHNLLRRWSEL
9	MUSTER	3dkqA1	0.532	0.760	2.466	threading_9	L-IEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAA-TTRKRNQQLDKDDPVAVALGQQI-DRLLAHPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTPDG--IRTDLSATLFLSEPENYQGGELVIQDTYGQQSIKLSAGSLVLYPSSSLHQVTPVLSGERTAAFWL-QS------------------------------------------------
10	SPARKS	3gzea	0.171	0.756	2.811	threading_10	RAFLLKNFLSDEECDYIVEKARPK-MVKSSVVDNESGKSVDSEIRTKGEDSVISKIEKRVAQVTMIP--------LENHEGLQVLHYHDGQKYEPHYDYFHDPVNAEHGGQRVVTMLMYLTTVE--EGGETVLPNAEQKLAVKPIKGDALMFYSASLHGSCPTLKGDKWSATKWIH--VAPIG------------------------------------------

Predicted Tertiary Structure


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TM-score=0.602 to 2iuwA SCOP code=b.82.2.10	TM-score=0.603 to 2iuwA SCOP code=b.82.2.10	TM-score=0.602 to 2iuwA SCOP code=b.82.2.10	TM-score=0.604 to 2iuwA SCOP code=b.82.2.10	TM-score=0.604 to 2iuwA SCOP code=b.82.2.10