Template-based Modeling Results for YBIT_ECOLI

Submitted Primary Sequence

>Length 530
MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWSENARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNYEDYLRSKGIE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWSENARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNYEDYLRSKGIE
CEEEEEEEEEECCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHCCCHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCEECCCCCCCCCCCEEEECCEEEECCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEECCHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEECCCCHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWSENARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNYEDYLRSKGIE
20101101021142100110002013111000000111010000000102122220201023311002022222223311001000101330130121123023233213300210120021014121120201002002002022321102122023012010100100112100000110111000200200120033130000000001200220011001011010100201022011001202321233233433113201200220223122121022112313303233132212311102033344124300202101100240100220202012111000003111010000100012131320202103202000011112220323210020013123323323100100120002132132303201212200000010012310000011012100130020012003403000000000220021002100101232012020202111323334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWSENARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNYEDYLRSKGIE
1	MUSTER	2ix8A4	0.294	0.815	2.594	threading_1	DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLRAIANGQVDG----FPTQEECRTVYVEHDDGTHSDTSVLDFVFE---------------------------------------SGVGTKEAIKDKLIEFGFTDEI--APISALSGGWK-KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKF-----------PEPGYLEGVKTKQKAIVKVTNEFQYPG-----------------------------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESDKTPSEYIQWRFQRPLTRKEIEEHCSLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRTPSGHN------------
2	SPARKS	2iwha	0.289	0.815	7.225	threading_2	DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGF---PTQEECRTVYVEHDDGTHSDTSVLDFVFES---------------------------------------GVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNT----------------------------------DLEFKFPEPGYLEGV-------KTKQKAIVKVTNMEFQYPGKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIHLDKTPSEYIQWRFQTGETRKEIEEHCSMLGLDPEIVSSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTP---------------
3	PROSPECT2	2iw3A	0.292	0.808	3.358	threading_3	DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLRAIANGQVDGFPT----QEECRTVYVEHDIDGTHDTSVLDFV---------------------------------------FESGVGTKEAIKDKLIEFGFTDE--IAPISALSGGWK-KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFK-----------FPEPGYLEGVKTKQKAIVK-----------------------------VTNEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIHLDKTPSEYIQWRFQTGETRKEIEEHCSLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDG----------------RTP
4	PPA-I	2ix8A4	0.299	0.815	7.840	threading_4	DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLRAIANGQVDGFPT----QEECRTVYVEHDDGTHSDTSVLDFVF---------------------------------------ESGVGTKEAIKDKLIEFGFTDE--IAPISALSGGWK-KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFK-----------FPEPGYLEGVKTKQKAIVKVTNEFQYPG-----------------------------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESDKTPSEYIQWRFQTGDRRKEIEEHCSLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRTPSGHN------------
5	HHPRED-l	2iw3_A	0.293	0.798	2.782	threading_5	DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTL-RAIANGQVDGFP---TQEECRTVYVEHDIDTHSDTSVLDFVFE---------------------------------------SGVGTKEAIKDKLIEFGFTDE----PISALSGGWK-KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAY-------------------------EELS-----N---------T--DLEFKFPEPGYLEGVKTKQKAIVKVTN-EFQYPGKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIELDKTPSEYIASGQFRPLTRKEIEEHCS-LGLDPEISHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGR-TP---------------
6	HHPRED-g	2iw3_A	0.291	0.798	2.740	threading_6	DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTL-RAIANGQVD-GFP--TQEECRTVYVEHDIDTHSDTSVLD---------------------------------------FVFESGVGTKEAIKDKLIEFGFTDE----PISALSGGWK-KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAK------------------------------AYEELSN---------TDLEFKFPEPGY--LEGVKTKQKAIVKVTN-EFQYPGKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESDKTPSEYIFSGQFRPLTRKEIEEHCS-LGLDPEIVHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGR-TP---------------
7	SP3	2iwha	0.292	0.815	6.127	threading_7	DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFP---TQEECRTVYVEHDDGTHSDTSVLDFVF---------------------------------------ESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKF-----------PEPGYLEGV------------------------------KTKQKAIVKVTNMEFQYTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIHLDKTPSEYIQWRFQTGEDRKEIEEHCSMLGLDPEIVSSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTP---------------
8	SAM-T99	2ix8A4	0.296	0.815	4.279	threading_8	DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLRAIANGQVD---GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDK---------------------------------------LIEFGFTDEI--APISALSGGWK-KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPE-----------PGYLEGVKTKQKAIVKVTNEFQYPGTS-----------------------------KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESDKTPSEYIQWRFQRPLTRKEIEEHCSLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGR-------------PSGHN
9	MUSTER	3bk7A	0.228	0.868	1.817	threading_9	IVNLEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN------------------ELQNYFERLKNIRPKPQYVDLLPKAVGKVRELLKKVDEVG---KFEEVVKELELE-NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV-YGE----PGVYGIFSK---------------PKGTRNGINEFLQGY---------------------LKDENVRFRPYE-IRFTKLSERRETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT--VAY--KPQYIKAEYEGTVYELLSKIDSSKNSNFYKTELLKPLGII-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEPGRALPPMGMMNRFLASVGIT
10	SPARKS	1yqta	0.200	0.868	5.479	threading_10	---EEDCVHRYGVNAF-VLYRLPVVKEGVVGIVGPNGTGKSTAVKILAGQLIPNLC--------------------GDNDSWDGVIRAFRELQNYFEKLKNGEIRPVVKPQYVDLIPKAGKVIELLKKADETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLEGSVLVVEHDLAVLDYLSDIIHVVYGE-----PGVYGIFSQP-------------------KGTRNGINEFLRGYLKDENV----------RFRPYEIKFTKTG----ERVEIERETLVTYPRLVKDYGS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVK-LAGVEEPTEGKIEWDL--TVAYKPQYIK--ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLEKTALVVEHDV-LIDYVSDRLVFEGEPGKYGRALEGNRFLASIGIT

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.553 to 1b0uA SCOP code=c.37.1.12	TM-score=0.548 to 1b0uA SCOP code=c.37.1.12	TM-score=0.557 to 2onkA SCOP code=c.37.1.12	TM-score=0.553 to 2onkA SCOP code=c.37.1.12	TM-score=0.551 to 1b0uA SCOP code=c.37.1.12