Template-based Modeling Results for YBIS_ECOLI

Submitted Primary Sequence

>Length 306
MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVITIPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKSVQTVTGQPDVDQVVLDEAIKNRSGMPVRLN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVITIPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKSVQTVTGQPDVDQVVLDEAIKNRSGMPVRLN
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEHHCEEEEEECCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVITIPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKSVQTVTGQPDVDQVVLDEAIKNRSGMPVRLN
531111000000000000000011221202232241112110020232323202100111210111012112223121132121010123221332233000001231100001332100000000003223312222101021222122121212012213121321121021122111000001001000000011222111310200020212002200320321020100222031223331210010021133232323232101010220021012233121200120033322111324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVITIPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKSVQTVTGQPDVDQVVLDEAIKNRSGMPVRLN
1	MUSTER	1y7mA	0.319	0.523	1.411	threading_1	----------------------------------------LTYQVKQGDT--LNSIAADFRISTAALLQANPSLQAGLT-AGQSIVIPG-LPDPYTIPYHIAVSIGAKTLTLSL--NNRVKTYPIAVGKILTQTP-TGEFYIINRQRNP---------------------------GGPFGAYWLSLSAHYGIHGTNNPASIGKAVSKGCIRH-NKDVIELASIVPNGTRVTINR-----------------------------------------------------------------------
2	PROSPECT2	1sezA1	0.073	0.944	1.511	threading_2	AKAGVSGLAAAYKLK------IHGLNVTVFEAEGKAGGKLRSVSQDGESEGDVTFLIDSLGL-REKQQFPLSQNKRYIARNGTPVLLPSKTSANKKRQRGSFSFLGGQTLTLRLNSRVLELSCS----CTEDSAIDSWSIISASPHKRQSEEESFDAVITAPLCDVKSKIAKRGNPFLLNFIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQH------GLKTLGTLFSSFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGLYGHNYDSVLDAIDKEKNLPGSVS
3	SPARKS	1y7ma	0.312	0.523	3.178	threading_3	----------------------------------------LTYQVKQGDT--LNSIAADFRISTAALLQANPSLQAGLT-AGQSIVIPGLPD-PYTIPYHIAVSIGAKTLTLSL--NNRVKTYPIAVGKILTQTP-TGEFYIINRQRNP---------------------------GGPFGAYWLSLSAHYGIHGTNNPASIGKAVSKGCIRH-NKDVIELASIVPNGTRVTINR-----------------------------------------------------------------------
4	PROSPECT2	1zatA	0.178	0.680	2.133	threading_4	KEQLASMNAIANVQVRQYVTDLGTKYNTSTNDTKFKSTKRGEVTVPVGTYSWTIQTDSET---EALKKAILAGQDFTRSPI----VQGGTTADHPLIEDTYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTP-AGVFYVWNKEEDATLKGT------------------NGTPYESPVNYWMPIDTGVGIHDSDWQPEYGGDGSHGCINTPPSVMKELFGMVEKGTPVLV------------------------------------------------------------------------F
5	PPA-I	1y7mA	0.312	0.523	2.004	threading_5	----------------------------------------LTYQVKQGDT--LNSIAADFRISTAALLQANPSLQAGLT-AGQSIVIPG-LPDPYTIPYHIAVSIGAKTLTLSLNN--RVKTYPIAVGKILTQTPT-GEFYIINRQRNP---------------------------GGPFGAYWLSLSAHYGIHGTNNPASIGKAVSKGCIRH-NKDVIELASIVPNGTRVTINR-----------------------------------------------------------------------
6	HHPRED-l	1y7m_A	0.306	0.523	8.032	threading_6	----------------------------------------LTYQVKQGDT--LNSIAADFRISTAALLQANPSLQAGLT-AGQSIVIPG-LPDPYTIPYHIAVSIGAKTLTLSL-NNRV-KTYPIAVGKILTQTPTGEFYIIN-RQR---------------------------NPGGPFGAYWLSLSAHYGIHGTNNPASIGKAVSKGCIR-HNKDVIELASIVPNGTRVTINR-----------------------------------------------------------------------
7	HHPRED-g	1y7m_A	0.306	0.523	7.127	threading_7	----------------------------------------LTYQVKQGDT--LNSIAADFRISTAALLQANPSLQAGLT-AGQSIVIPG-LPDPYTIPYHIAVSIGAKTLTLSLN-NRV-KTYPIAVGKILTQTPT-GEFYIINRQRN---------------------------PGGPFGAYWLSLSAHYGIHGTNNPASIGKAVSKGCIR-HNKDVIELASIVPNGTRVTINR-----------------------------------------------------------------------
8	SP3	1y7ma	0.306	0.523	3.244	threading_8	----------------------------------------LTYQVKQGDT--LNSIAADFRISTAALLQANPSLQAGLT-AGQSIVIPGLPDPY-TIPYHIAVSIGAKTLTLSL--NNRVKTYPIAVGKILTQTP-TGEFYIINRQRNP---------------------------GGPFGAYWLSLSAHYGIHGTNNPASIGKAVSKGCIRH-NKDVIELASIVPNGTRVTINR-----------------------------------------------------------------------
9	SAM-T99	1y7mA	0.310	0.516	5.401	threading_9	----------------------------------------LTYQVKQG--DTLNSIAADFRISTAALLQANPSLQAGLT-AGQSIVIPGLP-DPYTIPYHIAVSIGAKTLTL--SLNNRVKTYPIAVGKILTQTPT-GEFYIINRQRNP---------------------------GGPFGAYWLSLSAHYGIHGTNNPASIGKAVSKGCIR-HNKDVIELASIVPNGTRVTI-------------------------------------------------------------------------
10	MUSTER	1zatA	0.198	0.660	0.950	threading_10	GKVDLTEQVRQYVTDLGTKYNTSTNDTKFKSTKR------GEVTVPVGTYSWTIQTDSETEALKKAILAGQDFTRSPIVQGGTT------ADHPLIEDTYIEVDLENQHMWYYK-DGKVALETDIVSGKPTTPTP-AGVFYVWNKEEDATLKGTNG-----------------TPYESPVN-YWMPIDWGVGIHDSDWQPEYGGRGSHGCINTPPSVMKELFGMVEKGTPVLVF------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.741 to 1y7mA SCOP code=b.160.1.1	TM-score=0.549 to 1sezA SCOP code=c.3.1.2	TM-score=0.742 to 1y7mA SCOP code=b.160.1.1	TM-score=0.742 to 1y7mA SCOP code=b.160.1.1	TM-score=0.688 to 1zatA SCOP code=b.160.1.1