Template-based Modeling Results for YBIR_ECOLI

Submitted Primary Sequence

>Length 372
MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFIAQMAPLAGAMMLTLLLLCWCCFPGKAMQYHTGVQTPEWKPRLVWSCLGLYIVFLTALEFKQELWGLVIVAAGFALLARRVVLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLGNVSHLSEPGLWLTAIGLSQVISNVPSTILLLNYVPPSLLLVWAVNVGGFGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVILPAN
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFIAQMAPLAGAMMLTLLLLCWCCFPGKAMQYHTGVQTPEWKPRLVWSCLGLYIVFLTALEFKQELWGLVIVAAGFALLARRVVLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLGNVSHLSEPGLWLTAIGLSQVISNVPSTILLLNYVPPSLLLVWAVNVGGFGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVILPAN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFIAQMAPLAGAMMLTLLLLCWCCFPGKAMQYHTGVQTPEWKPRLVWSCLGLYIVFLTALEFKQELWGLVIVAAGFALLARRVVLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLGNVSHLSEPGLWLTAIGLSQVISNVPSTILLLNYVPPSLLLVWAVNVGGFGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVILPAN
531210321101000000000000000010011310031011300000000000020022000010001100321221210000000000000100110000000000001003304121120000000000000000101002000011201020000000000000000000000000012231232322232232212000000000000000010101000000000000010220032021200000000000020023022121100101211320110000000200100000100021011000000001000000000000000002002332110200100000000000000000010224
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFIAQMAPLAGAMMLTLLLLCWCCFPGKAMQYHTGVQTPEWKPRLVWSCLGLYIVFLTALEFKQELWGLVIVAAGFALLARRVVLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLGNVSHLSEPGLWLTAIGLSQVISNVPSTILLLNYVPPSLLLVWAVNVGGFGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVILPAN
1	PROSPECT2	1jdha	0.113	1.000	1.950	threading_1	AAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQGLLAIFKSGGIPALVHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKRVLKVLSVCSSNKPAIVEAGGMQALGLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLVAAGVLCELAQD
2	PROSPECT2	1ejlI	0.095	0.992	1.909	threading_2	GTVDIVKGINLESQLQATQAARKLLSREKQPPIDNIIRADCSPIQFESAWALTQTKAVVDGGAIPAFISLL---ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSLRNLTWTLSNLCRNKNPAPPLDAVTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISFQAAEKLGETEKLSIMIEECGGLDKIVYKASLNLIEFS
3	PROSPECT2	1ee4a	0.081	0.992	1.868	threading_3	QELPQMTQQMQEQLSATVKFRQILDVVIQAGVVPRLVEFMNQPEMLQLEAAWALTKVVVDADAVPLFIQLLYT---GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTSNLCRGKKPQPDWSVVTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLRYLVSQGCIKPLCDLLIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCIYEKAYKIIETYF
4	PROSPECT2	1xm9A	0.074	0.946	1.812	threading_4	LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLTNKLETRRQNGIREAVSLL--RRTGNAEIQKQLTGLLWNLSSTDELKEELIVLADRVIIPFSGWCVVDPEVFFNATGCLRN------LSSADAGRQTMRNYSGLIDSLMAYVQNCVAAVENCMCVLHNLSYRLEYNALPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS------KGLMSSGMSQLIG------LKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLVMGNQVFPEVTRLLTSHTGNTSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCAAEAARLLLGVL
5	PROSPECT2	3a6pA1	0.102	0.976	1.707	threading_5	AM-------DQVNALCEQLVKAVTVMMDPNSTQRYRLEAKTQVAIVRHFGLQILEHVVEKVYLKNSVMELIANGTLNIDALSRIVVMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVLEDRKPLMVLFGDVAMHYILSAAQTADGKHYVFLKRLCQVLCALGN--QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNTDSPSCEYSRFDVMRLACRLDPKTSFQMAGETF
6	MUSTER	3zuxA	0.100	0.804	0.903	threading_6	ILSKISSFIGKTFSLWAALFAAAAFFA-------DTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKH--------------------PKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGC-------PGGTASNVMTYL-ARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEML--------EIQAAGMLMSIVKMVLLPIVLGLIVHKVLG-----------KTEKLTDA--LPLVSVAAIVLIIGAVVGAS--KGKIMESGLLI---FAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGM-------SGLAAALAAAHFAAAPV----AVPGALFSVWHNISGSLLATYW-AA
7	SPARKS	3nd0a	0.070	0.925	0.898	threading_7	-------SLHPRTLVAAIVVGLITGVLGAGFKRSQLAQILAPITALISGGMVALSFWLMKRGIPQIEGHLEGKLPLVWQRVLPIKLVGGFLSLGAMLEGPTIQMGGSIGQMTGGWFKATQQRILIAVGAGAGLATA---FNAPLAGVALIHPRFRSQ---TLAYHSLLFGCVMATIILRMIRGQSAIISLTEFKRVPLDS------------LWMFIILGILFGVMGYTFNRGLFKVLDWFDRLPPLATKWKGFLLGSIIGIPLTDGGDNAVLWAFNSQSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIAS---IVSVAMARHFHLLFPSQIPEPAVMAIAGMGALVAATVRAPLTAILLTIMTDN
8	PROSPECT2	1b3ua	0.081	1.000	1.675	threading_8	FTTLVGGPEYVHCLLPPLEAVESLRAISHEHSPSDLEAHFGDWFTSRTSACGLFSVCYPRVSVKAELRQYFRNLCSDDPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSKFTELQKAVGPEITKTDLVPAFQNLMKDCEAVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHLSEVCGQDITTKHMLPTVLRMAGDPV
9	PPA-I	3g61A1	0.065	0.906	0.938	threading_9	VSVLTMFRYAGWLDRLYMLVGTLAAIIHGV--ALPLMMLI---FGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKI----RQKFFHAIMNQEIGWFDVH--DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFII-------GFTRIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSGWQLTLLLLAIVPIIAIAGV--VEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLT---------------REQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYTQ
10	HHPRED-l	3o7q_A	0.090	0.901	0.045	threading_10	-------R-SYIIPFALLCSLFFANNLNDILL-PQFQQAFTNFQAGLIQSAFYFGYF-----IIPIPAGILMKKLS-YKAGIITLYALGAALAAEIMNYTLFLVLETAANPFTVLGPESSGHFRLNAQTFNSFGAIIAV---VFGQSLILSNVMSPESVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDKQGSFSIRHWRWAVLAQFCYVGYAVEEGMTAGFAANCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS-A----FAGG---HVGLIALTLCSAFMSIQYPTIFSLGNLGQ--D-TKYGSSFIVMTI--IGGGIVTPVMGFVSDAGNIPTAEL-----IPALCFAVIFIFARFRSQ-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.414 to 1dowA SCOP code=a.24.9.1	TM-score=0.653 to 1wa5B SCOP code=a.118.1.1	TM-score=0.866 to 1wa5B SCOP code=a.118.1.1	TM-score=0.869 to 1ialA SCOP code=a.118.1.1	TM-score=0.807 to 1t5jA SCOP code=a.209.1.1